Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RPL37P21-201ENST00000435890 276 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.81□□□□□ -1.64
SMARCA1P28370 GDI2P2-201ENST00000445131 608 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC4.81□□□□□ -1.64
SMARCA1P28370 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC4.81□□□□□ -1.64
SMARCA1P28370 AL645939.1-201ENST00000453429 797 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.81□□□□□ -1.64
SMARCA1P28370 SUMO2P2-201ENST00000456482 255 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 RPL36AP13-201ENST00000457490 317 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AC010469.1-201ENST00000463864 576 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SMARCA1P28370 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.81□□□□□ -1.64
SMARCA1P28370 RN7SL604P-201ENST00000492589 296 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AC090453.1-201ENST00000495560 436 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AC021678.1-201ENST00000505195 936 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 POU5F1P7-201ENST00000508759 541 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AC093824.1-201ENST00000508796 343 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 CDC42P4-201ENST00000510507 563 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 PPBPP1-201ENST00000510807 373 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AF131216.2-201ENST00000512316 564 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.81□□□□□ -1.64
SMARCA1P28370 SNORA31.9-201ENST00000516429 84 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 IGLV3-26-201ENST00000520756 302 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.81□□□□□ -1.64
SMARCA1P28370 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.81□□□□□ -1.64
SMARCA1P28370 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC4.81□□□□□ -1.64
SMARCA1P28370 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.81□□□□□ -1.64
SMARCA1P28370 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC4.81□□□□□ -1.64
SMARCA1P28370 CENPUP2-201ENST00000555897 1186 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AC027807.1-201ENST00000559921 996 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AC022655.2-201ENST00000577280 318 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 MIR544B-201ENST00000582372 78 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AC005771.1-201ENST00000585581 349 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.81□□□□□ -1.64
SMARCA1P28370 AC107304.1-201ENST00000604229 296 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.81□□□□□ -1.64
SMARCA1P28370 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.81□□□□□ -1.64
SMARCA1P28370 AC064801.1-201ENST00000612025 407 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AC087241.4-201ENST00000612441 480 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 DLEU1_2.1-201ENST00000617920 342 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.81□□□□□ -1.64
SMARCA1P28370 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC4.81□□□□□ -1.64
SMARCA1P28370 AC008785.1-201ENST00000624475 456 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AL603839.4-201ENST00000624658 1005 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SMARCA1P28370 AL136964.1-201ENST00000622038 2990 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AC017104.4-201ENST00000636283 1592 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SMARCA1P28370 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.81□□□□□ -1.64
SMARCA1P28370 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMARCA1P28370 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.8□□□□□ -1.64
SMARCA1P28370 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SMARCA1P28370 AC087190.4-201ENST00000574616 8334 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SMARCA1P28370 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.8□□□□□ -1.64
SMARCA1P28370 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.8□□□□□ -1.64
SMARCA1P28370 RNU6-1215P-201ENST00000384441 102 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 MIR153-1-201ENST00000384914 90 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 AL022722.2-201ENST00000402519 180 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 RNU2-66P-201ENST00000410650 161 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 AL356095.1-201ENST00000417217 199 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC4.8□□□□□ -1.64
SMARCA1P28370 AL445669.1-201ENST00000426743 755 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC4.8□□□□□ -1.64
SMARCA1P28370 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.8□□□□□ -1.64
SMARCA1P28370 SNRPEP7-201ENST00000438350 220 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 ARPC3P5-201ENST00000448802 534 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.8□□□□□ -1.64
SMARCA1P28370 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.8□□□□□ -1.64
SMARCA1P28370 AC017015.1-201ENST00000477387 286 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.8□□□□□ -1.64
SMARCA1P28370 MTND2P33-201ENST00000506452 1031 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC4.8□□□□□ -1.64
SMARCA1P28370 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC4.8□□□□□ -1.64
SMARCA1P28370 HSPA8P13-201ENST00000523715 472 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.8□□□□□ -1.64
SMARCA1P28370 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC4.8□□□□□ -1.64
SMARCA1P28370 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC4.8□□□□□ -1.64
SMARCA1P28370 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.8□□□□□ -1.64
SMARCA1P28370 CYP4A43P-201ENST00000568156 121 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.8□□□□□ -1.64
SMARCA1P28370 MIR4528-201ENST00000577763 90 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.8□□□□□ -1.64
SMARCA1P28370 AP001094.1-201ENST00000579805 193 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 MIR4307-201ENST00000582802 84 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC4.8□□□□□ -1.64
SMARCA1P28370 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.8□□□□□ -1.64
SMARCA1P28370 YWHAQP7-201ENST00000603536 658 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 AC112187.2-201ENST00000604345 283 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 BCRP9-201ENST00000605312 388 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 AC023043.4-201ENST00000612081 449 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC4.8□□□□□ -1.64
SMARCA1P28370 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC4.8□□□□□ -1.64
SMARCA1P28370 AC055839.1-201ENST00000634467 498 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 AC093591.3-201ENST00000634516 308 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SMARCA1P28370 AC116667.1-201ENST00000604855 2072 ntBASIC4.8□□□□□ -1.64
SMARCA1P28370 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SMARCA1P28370 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.8□□□□□ -1.64
SMARCA1P28370 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms