Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX1P28360 AL591704.1-201ENST00000432574 275 ntBASIC5.62□□□□□ -1.51
MSX1P28360 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
MSX1P28360 RPL23AP31-201ENST00000456160 467 ntBASIC5.62□□□□□ -1.51
MSX1P28360 AC087385.1-201ENST00000475062 312 ntBASIC5.62□□□□□ -1.51
MSX1P28360 RPL21P103-201ENST00000479921 488 ntBASIC5.62□□□□□ -1.51
MSX1P28360 RNA5SP434-201ENST00000516647 121 ntBASIC5.62□□□□□ -1.51
MSX1P28360 RNU7-4P-201ENST00000516961 62 ntBASIC5.62□□□□□ -1.51
MSX1P28360 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC5.62□□□□□ -1.51
MSX1P28360 AC063949.1-201ENST00000552900 865 ntBASIC5.62□□□□□ -1.51
MSX1P28360 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX1P28360 AC006600.1-201ENST00000572529 153 ntBASIC5.62□□□□□ -1.51
MSX1P28360 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX1P28360 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX1P28360 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX1P28360 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX1P28360 AC025588.3-201ENST00000604182 274 ntBASIC5.62□□□□□ -1.51
MSX1P28360 NANOGP3-201ENST00000605855 286 ntBASIC5.62□□□□□ -1.51
MSX1P28360 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.62□□□□□ -1.51
MSX1P28360 AC141002.1-201ENST00000607025 279 ntBASIC5.62□□□□□ -1.51
MSX1P28360 AL137067.2-201ENST00000621202 131 ntBASIC5.62□□□□□ -1.51
MSX1P28360 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
MSX1P28360 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
MSX1P28360 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
MSX1P28360 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
MSX1P28360 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
MSX1P28360 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
MSX1P28360 AC011978.2-201ENST00000569835 2054 ntBASIC5.62□□□□□ -1.51
MSX1P28360 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
MSX1P28360 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.62□□□□□ -1.51
MSX1P28360 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
MSX1P28360 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
MSX1P28360 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSX1P28360 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSX1P28360 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
MSX1P28360 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
MSX1P28360 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSX1P28360 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.61□□□□□ -1.51
MSX1P28360 SNORA21-201ENST00000362423 132 ntBASIC5.61□□□□□ -1.51
MSX1P28360 RNU6-212P-201ENST00000362642 104 ntBASIC5.61□□□□□ -1.51
MSX1P28360 RN7SKP115-201ENST00000363177 317 ntBASIC5.61□□□□□ -1.51
MSX1P28360 SNORD27-201ENST00000363981 72 ntBASIC5.61□□□□□ -1.51
MSX1P28360 Y_RNA.291-201ENST00000364886 113 ntBASIC5.61□□□□□ -1.51
MSX1P28360 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.61□□□□□ -1.51
MSX1P28360 RNU6-637P-201ENST00000384050 107 ntBASIC5.61□□□□□ -1.51
MSX1P28360 SNORA17A-201ENST00000391185 133 ntBASIC5.61□□□□□ -1.51
MSX1P28360 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.61□□□□□ -1.51
MSX1P28360 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
MSX1P28360 SYF2P2-201ENST00000417620 583 ntBASIC5.61□□□□□ -1.51
MSX1P28360 BX276092.3-201ENST00000424182 230 ntBASIC5.61□□□□□ -1.51
MSX1P28360 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.61□□□□□ -1.51
MSX1P28360 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSX1P28360 AC022431.1-201ENST00000450941 438 ntBASIC5.61□□□□□ -1.51
MSX1P28360 GNL2P1-201ENST00000451274 2190 ntBASIC5.61□□□□□ -1.51
MSX1P28360 NXT1P1-201ENST00000458481 316 ntBASIC5.61□□□□□ -1.51
MSX1P28360 RN7SL352P-201ENST00000466002 277 ntBASIC5.61□□□□□ -1.51
MSX1P28360 CREM-226ENST00000469949 721 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX1P28360 AC114728.1-201ENST00000488289 483 ntBASIC5.61□□□□□ -1.51
MSX1P28360 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.61□□□□□ -1.51
MSX1P28360 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX1P28360 RNU6-897P-201ENST00000517135 105 ntBASIC5.61□□□□□ -1.51
MSX1P28360 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX1P28360 AC018442.3-201ENST00000523025 183 ntBASIC5.61□□□□□ -1.51
MSX1P28360 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
MSX1P28360 AP003733.2-201ENST00000529409 171 ntBASIC5.61□□□□□ -1.51
MSX1P28360 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX1P28360 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX1P28360 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
MSX1P28360 AC130289.1-201ENST00000577321 73 ntBASIC5.61□□□□□ -1.51
MSX1P28360 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC5.61□□□□□ -1.51
MSX1P28360 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.61□□□□□ -1.51
MSX1P28360 AC116667.1-201ENST00000604855 2072 ntBASIC5.61□□□□□ -1.51
MSX1P28360 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.61□□□□□ -1.51
MSX1P28360 SNORA17.5-201ENST00000630429 132 ntBASIC5.61□□□□□ -1.51
MSX1P28360 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
MSX1P28360 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSX1P28360 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSX1P28360 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.6□□□□□ -1.51
MSX1P28360 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
MSX1P28360 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX1P28360 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSX1P28360 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSX1P28360 AL121886.1-201ENST00000358609 435 ntBASIC5.6□□□□□ -1.51
MSX1P28360 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
MSX1P28360 RNU6-280P-201ENST00000364145 104 ntBASIC5.6□□□□□ -1.51
MSX1P28360 RN7SKP81-201ENST00000365603 331 ntBASIC5.6□□□□□ -1.51
MSX1P28360 RNU6-886P-201ENST00000384319 105 ntBASIC5.6□□□□□ -1.51
MSX1P28360 SNORA51.11-201ENST00000384442 131 ntBASIC5.6□□□□□ -1.51
MSX1P28360 U3.29-201ENST00000391296 212 ntBASIC5.6□□□□□ -1.51
MSX1P28360 RN7SKP229-201ENST00000410465 302 ntBASIC5.6□□□□□ -1.51
MSX1P28360 RNU2-14P-201ENST00000411053 191 ntBASIC5.6□□□□□ -1.51
MSX1P28360 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX1P28360 RPL35AP31-201ENST00000418340 337 ntBASIC5.6□□□□□ -1.51
MSX1P28360 CHEK2P5-201ENST00000423877 246 ntBASIC5.6□□□□□ -1.51
MSX1P28360 RPL12P12-201ENST00000424633 501 ntBASIC5.6□□□□□ -1.51
MSX1P28360 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX1P28360 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX1P28360 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.6□□□□□ -1.51
MSX1P28360 AC002553.3-201ENST00000453002 341 ntBASIC5.6□□□□□ -1.51
MSX1P28360 HLA-DPA3-207ENST00000454398 229 ntBASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms