Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CDH12P3-201ENST00000517935 295 ntBASIC3.65□□□□□ -1.83
VIMP08670 CDH12P1-201ENST00000518435 295 ntBASIC3.65□□□□□ -1.83
VIMP08670 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.65□□□□□ -1.83
VIMP08670 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.65□□□□□ -1.83
VIMP08670 AC024224.1-201ENST00000538284 609 ntBASIC3.65□□□□□ -1.83
VIMP08670 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
VIMP08670 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VIMP08670 OR4K7P-201ENST00000580232 945 ntBASIC3.65□□□□□ -1.83
VIMP08670 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.65□□□□□ -1.83
VIMP08670 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC3.65□□□□□ -1.83
VIMP08670 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.65□□□□□ -1.83
VIMP08670 AC090897.3-201ENST00000636973 1157 ntBASIC3.65□□□□□ -1.83
VIMP08670 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
VIMP08670 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.65□□□□□ -1.83
VIMP08670 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.65□□□□□ -1.83
VIMP08670 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.65□□□□□ -1.83
VIMP08670 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.65□□□□□ -1.83
VIMP08670 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
VIMP08670 AC068647.1-201ENST00000489539 2265 ntBASIC3.64□□□□□ -1.83
VIMP08670 SRP72P2-201ENST00000344851 1979 ntBASIC3.64□□□□□ -1.83
VIMP08670 AC007656.2-201ENST00000624902 4547 ntBASIC3.64□□□□□ -1.83
VIMP08670 SNORA62-201ENST00000365493 153 ntBASIC3.64□□□□□ -1.83
VIMP08670 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.64□□□□□ -1.83
VIMP08670 RN7SKP33-201ENST00000410942 340 ntBASIC3.64□□□□□ -1.83
VIMP08670 SSR1P2-201ENST00000415208 787 ntBASIC3.64□□□□□ -1.83
VIMP08670 TIMM9P2-201ENST00000419324 266 ntBASIC3.64□□□□□ -1.83
VIMP08670 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.64□□□□□ -1.83
VIMP08670 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.64□□□□□ -1.83
VIMP08670 NIPA2P1-201ENST00000426223 976 ntBASIC3.64□□□□□ -1.83
VIMP08670 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.64□□□□□ -1.83
VIMP08670 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.64□□□□□ -1.83
VIMP08670 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.64□□□□□ -1.83
VIMP08670 MTND2P19-201ENST00000449129 1012 ntBASIC3.64□□□□□ -1.83
VIMP08670 VN1R17P-201ENST00000472048 1090 ntBASIC3.64□□□□□ -1.83
VIMP08670 AC084357.1-201ENST00000473404 255 ntBASIC3.64□□□□□ -1.83
VIMP08670 AC012181.1-201ENST00000479895 423 ntBASIC3.64□□□□□ -1.83
VIMP08670 RPS4XP13-201ENST00000483219 789 ntBASIC3.64□□□□□ -1.83
VIMP08670 AC091167.1-201ENST00000492017 396 ntBASIC3.64□□□□□ -1.83
VIMP08670 AC090453.1-201ENST00000495560 436 ntBASIC3.64□□□□□ -1.83
VIMP08670 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.64□□□□□ -1.83
VIMP08670 XKRY-201ENST00000510392 1100 ntBASIC3.64□□□□□ -1.83
VIMP08670 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.64□□□□□ -1.83
VIMP08670 AC109445.1-201ENST00000512356 383 ntBASIC3.64□□□□□ -1.83
VIMP08670 FABP5P12-201ENST00000515543 389 ntBASIC3.64□□□□□ -1.83
VIMP08670 MTND2P32-201ENST00000521584 1038 ntBASIC3.64□□□□□ -1.83
VIMP08670 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.64□□□□□ -1.83
VIMP08670 AL512347.1-201ENST00000566420 503 ntBASIC3.64□□□□□ -1.83
VIMP08670 MIR4277-201ENST00000578298 84 ntBASIC3.64□□□□□ -1.83
VIMP08670 BNIP3P11-201ENST00000603878 563 ntBASIC3.64□□□□□ -1.83
VIMP08670 AC010738.1-201ENST00000604970 987 ntBASIC3.64□□□□□ -1.83
VIMP08670 RNU4-89P-201ENST00000607443 133 ntBASIC3.64□□□□□ -1.83
VIMP08670 AC107294.3-201ENST00000609211 526 ntBASIC3.64□□□□□ -1.83
VIMP08670 MIR6820-201ENST00000611508 62 ntBASIC3.64□□□□□ -1.83
VIMP08670 AC025588.4-201ENST00000615802 908 ntBASIC3.64□□□□□ -1.83
VIMP08670 AP000346.3-201ENST00000622821 210 ntBASIC3.64□□□□□ -1.83
VIMP08670 AC004009.2-201ENST00000623016 728 ntBASIC3.64□□□□□ -1.83
VIMP08670 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.64□□□□□ -1.83
VIMP08670 AP001002.2-201ENST00000625137 386 ntBASIC3.64□□□□□ -1.83
VIMP08670 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.64□□□□□ -1.83
VIMP08670 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VIMP08670 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
VIMP08670 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
VIMP08670 AC073429.2-201ENST00000569694 1444 ntBASIC3.63□□□□□ -1.83
VIMP08670 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VIMP08670 CYB5AP4-201ENST00000396692 399 ntBASIC3.63□□□□□ -1.83
VIMP08670 RNU4-6P-201ENST00000410804 122 ntBASIC3.63□□□□□ -1.83
VIMP08670 RNA5SP31-201ENST00000411144 127 ntBASIC3.63□□□□□ -1.83
VIMP08670 RNA5SP107-201ENST00000411358 122 ntBASIC3.63□□□□□ -1.83
VIMP08670 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.63□□□□□ -1.83
VIMP08670 TRIAP1P1-201ENST00000427062 225 ntBASIC3.63□□□□□ -1.83
VIMP08670 MTND4LP10-201ENST00000435146 291 ntBASIC3.63□□□□□ -1.83
VIMP08670 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.63□□□□□ -1.83
VIMP08670 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.63□□□□□ -1.83
VIMP08670 HMGB1P15-201ENST00000453854 435 ntBASIC3.63□□□□□ -1.83
VIMP08670 AC114981.1-201ENST00000503897 678 ntBASIC3.63□□□□□ -1.83
VIMP08670 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VIMP08670 WBP1LP4-201ENST00000505043 344 ntBASIC3.63□□□□□ -1.83
VIMP08670 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.63□□□□□ -1.83
VIMP08670 MTND4LP22-201ENST00000508209 276 ntBASIC3.63□□□□□ -1.83
VIMP08670 AC004062.1-201ENST00000509926 645 ntBASIC3.63□□□□□ -1.83
VIMP08670 AC093853.1-201ENST00000515689 483 ntBASIC3.63□□□□□ -1.83
VIMP08670 AC068657.1-201ENST00000520807 306 ntBASIC3.63□□□□□ -1.83
VIMP08670 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.63□□□□□ -1.83
VIMP08670 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
VIMP08670 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.63□□□□□ -1.83
VIMP08670 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.63□□□□□ -1.83
VIMP08670 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VIMP08670 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.63□□□□□ -1.83
VIMP08670 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.63□□□□□ -1.83
VIMP08670 AC090695.1-201ENST00000561269 1222 ntBASIC3.63□□□□□ -1.83
VIMP08670 AC005951.1-201ENST00000576706 485 ntBASIC3.63□□□□□ -1.83
VIMP08670 AC008507.1-201ENST00000587506 734 ntBASIC3.63□□□□□ -1.83
VIMP08670 AL450336.1-201ENST00000605180 586 ntBASIC3.63□□□□□ -1.83
VIMP08670 AC013470.4-201ENST00000619978 986 ntBASIC3.63□□□□□ -1.83
VIMP08670 AC022149.2-201ENST00000621061 203 ntBASIC3.63□□□□□ -1.83
VIMP08670 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.63□□□□□ -1.83
VIMP08670 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
VIMP08670 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
VIMP08670 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.63□□□□□ -1.83
VIMP08670 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms