Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC88BA6NC98 AC008432.1-201ENST00000615912 1320 ntBASIC3.87□□□□□ -1.79
CCDC88BA6NC98 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC88BA6NC98 OR5H15-201ENST00000383696 930 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 HMGB1P11-201ENST00000413899 637 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 RPS24P8-201ENST00000431490 402 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC88BA6NC98 GAPDHP27-201ENST00000447427 1020 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 AL162388.1-201ENST00000450912 352 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 GSTA11P-201ENST00000452866 669 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC88BA6NC98 OR9N1P-201ENST00000491296 333 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.86□□□□□ -1.79
CCDC88BA6NC98 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC88BA6NC98 ELOCP31-201ENST00000540463 467 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.86□□□□□ -1.79
CCDC88BA6NC98 AADACP1-206ENST00000561502 1193 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 AC009831.4-201ENST00000620744 325 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC88BA6NC98 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.86□□□□□ -1.79
CCDC88BA6NC98 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC88BA6NC98 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC88BA6NC98 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC88BA6NC98 RPL7P52-201ENST00000449200 742 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 NFU1-207ENST00000462320 558 ntTSL 4 BASIC3.86□□□□□ -1.79
CCDC88BA6NC98 AC116337.1-201ENST00000509680 687 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 RNA5SP200-201ENST00000516360 103 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC88BA6NC98 AC105137.2-201ENST00000569073 466 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 AC023813.4-201ENST00000607580 580 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 AC104237.2-201ENST00000612456 443 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC88BA6NC98 AL356266.1-201ENST00000623311 483 ntBASIC3.86□□□□□ -1.79
CCDC88BA6NC98 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC88BA6NC98 SYT14P1-202ENST00000600441 1448 ntBASIC3.85□□□□□ -1.79
CCDC88BA6NC98 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC88BA6NC98 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC88BA6NC98 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC88BA6NC98 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.85□□□□□ -1.79
CCDC88BA6NC98 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC88BA6NC98 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC88BA6NC98 AC013470.3-201ENST00000420252 1194 ntBASIC3.85□□□□□ -1.79
CCDC88BA6NC98 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC88BA6NC98 CEACAMP4-201ENST00000457676 421 ntBASIC3.85□□□□□ -1.79
CCDC88BA6NC98 RNU6-548P-201ENST00000517083 115 ntBASIC3.85□□□□□ -1.79
CCDC88BA6NC98 AL451074.6-201ENST00000608512 729 ntBASIC3.85□□□□□ -1.79
CCDC88BA6NC98 AC010378.1-201ENST00000619270 362 ntBASIC3.85□□□□□ -1.79
CCDC88BA6NC98 MIR219B-201ENST00000637023 88 ntBASIC3.85□□□□□ -1.79
CCDC88BA6NC98 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
CCDC88BA6NC98 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC88BA6NC98 FRG1BP-201ENST00000278882 761 ntBASIC3.84□□□□□ -1.8
CCDC88BA6NC98 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC88BA6NC98 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.84□□□□□ -1.8
CCDC88BA6NC98 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC3.84□□□□□ -1.8
CCDC88BA6NC98 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.84□□□□□ -1.8
CCDC88BA6NC98 RNU6ATAC9P-201ENST00000516210 116 ntBASIC3.84□□□□□ -1.8
CCDC88BA6NC98 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.84□□□□□ -1.8
CCDC88BA6NC98 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.84□□□□□ -1.8
CCDC88BA6NC98 RNU6-84P-201ENST00000607737 102 ntBASIC3.84□□□□□ -1.8
CCDC88BA6NC98 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
CCDC88BA6NC98 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC88BA6NC98 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.83□□□□□ -1.8
CCDC88BA6NC98 AL139156.1-201ENST00000412785 841 ntBASIC3.83□□□□□ -1.8
CCDC88BA6NC98 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC88BA6NC98 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC88BA6NC98 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC88BA6NC98 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
CCDC88BA6NC98 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC88BA6NC98 AC093591.3-201ENST00000634516 308 ntBASIC3.83□□□□□ -1.8
CCDC88BA6NC98 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.83□□□□□ -1.8
CCDC88BA6NC98 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.83□□□□□ -1.8
CCDC88BA6NC98 RPS27AP18-201ENST00000515536 459 ntBASIC3.82□□□□□ -1.8
CCDC88BA6NC98 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC88BA6NC98 AL645944.1-201ENST00000603857 493 ntBASIC3.82□□□□□ -1.8
CCDC88BA6NC98 AL160237.3-201ENST00000604114 1013 ntBASIC3.82□□□□□ -1.8
CCDC88BA6NC98 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC88BA6NC98 AP003499.2-201ENST00000624100 483 ntBASIC3.82□□□□□ -1.8
CCDC88BA6NC98 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC88BA6NC98 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
CCDC88BA6NC98 MTND5P29-201ENST00000458676 1807 ntBASIC3.82□□□□□ -1.8
CCDC88BA6NC98 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC88BA6NC98 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC88BA6NC98 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC88BA6NC98 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
CCDC88BA6NC98 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC3.81□□□□□ -1.8
CCDC88BA6NC98 ATP5F1P6-201ENST00000402768 767 ntBASIC3.81□□□□□ -1.8
CCDC88BA6NC98 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC88BA6NC98 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC88BA6NC98 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC88BA6NC98 AL031736.2-201ENST00000426573 787 ntBASIC3.81□□□□□ -1.8
CCDC88BA6NC98 RPL36AP6-201ENST00000435770 321 ntBASIC3.81□□□□□ -1.8
CCDC88BA6NC98 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC88BA6NC98 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.81□□□□□ -1.8
CCDC88BA6NC98 CKS1BP2-201ENST00000497342 240 ntBASIC3.81□□□□□ -1.8
CCDC88BA6NC98 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC88BA6NC98 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC88BA6NC98 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC88BA6NC98 AC023043.3-201ENST00000593113 385 ntBASIC3.81□□□□□ -1.8
CCDC88BA6NC98 LRRC77P-213ENST00000637727 880 ntBASIC3.81□□□□□ -1.8
CCDC88BA6NC98 BX005019.1-201ENST00000561881 1810 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 125.4 ms