Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC026310.1-201ENST00000396004 378 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 HSPA8P15-201ENST00000401676 786 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AL357075.1-201ENST00000404107 726 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AL590635.1-201ENST00000406314 586 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC092809.3-201ENST00000415453 231 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 PTGES3P4-201ENST00000426243 356 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AL121578.2-201ENST00000448797 447 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC007395.1-201ENST00000451333 677 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC074255.1-201ENST00000511259 501 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC093664.1-201ENST00000511779 289 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 SCARNA11.1-201ENST00000516918 132 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AP005660.1-201ENST00000522972 293 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AP000859.1-201ENST00000525536 307 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 CASP1P1-201ENST00000526345 212 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AL590705.4-201ENST00000532209 134 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 CYCSP26-201ENST00000534107 320 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 FKBP1BP1-201ENST00000553366 325 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 MIR3613-201ENST00000579844 87 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 MIR5692A1-201ENST00000580523 69 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 BRDTP1-201ENST00000605735 677 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 SNORD113-5-201ENST00000607261 78 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 SNORD39.4-201ENST00000620099 78 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 Y_RNA.778-201ENST00000620203 90 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AL031601.2-202ENST00000622650 282 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC008785.1-201ENST00000624475 456 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 RNU6-371P-201ENST00000364283 108 ntBASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 RNU6ATAC16P-201ENST00000408591 138 ntBASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 Y_RNA.623-201ENST00000411128 95 ntBASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 HNRNPA1P18-201ENST00000433537 927 ntBASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 Z92846.1-201ENST00000456203 268 ntBASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 RNU7-87P-201ENST00000459343 62 ntBASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 RPL21P41-201ENST00000459863 264 ntBASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 RN7SL350P-201ENST00000492591 299 ntBASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 IGHVIII-11-1-201ENST00000522733 267 ntBASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 TGIF1P1-201ENST00000558095 802 ntBASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 AC006329.2-201ENST00000611491 394 ntBASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 USP45-204ENST00000369233 2514 ntTSL 5 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
VPS9D1Q9Y2B5 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
VPS9D1Q9Y2B5 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
VPS9D1Q9Y2B5 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
VPS9D1Q9Y2B5 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
VPS9D1Q9Y2B5 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.48□□□□□ -1.37
VPS9D1Q9Y2B5 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
VPS9D1Q9Y2B5 RNU6-151P-201ENST00000364158 107 ntBASIC6.48□□□□□ -1.37
VPS9D1Q9Y2B5 RNU6-637P-201ENST00000384050 107 ntBASIC6.48□□□□□ -1.37
VPS9D1Q9Y2B5 MIR521-1-201ENST00000384902 87 ntBASIC6.48□□□□□ -1.37
VPS9D1Q9Y2B5 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms