Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AC022861.1-201ENST00000522981 663 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 UBTFL10-201ENST00000528532 562 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AC002400.1-201ENST00000569310 726 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AC120057.2-201ENST00000571520 271 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AL163642.2-201ENST00000604722 1019 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AL139344.1-201ENST00000605228 195 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 MIR6716-201ENST00000613413 80 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AL607023.1-201ENST00000620045 248 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AC131159.1-201ENST00000621854 213 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AC120349.3-201ENST00000624377 529 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AC091925.2-201ENST00000625059 256 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AL356473.1-201ENST00000406203 1408 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AP000526.1-201ENST00000603308 1388 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 SNORA56-201ENST00000383966 129 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 ATP5F1P3-201ENST00000397213 657 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 MTHFD2P2-201ENST00000407725 247 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 MIR1183-201ENST00000408856 89 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 RNA5SP317-201ENST00000410176 116 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 RNA5SP311-201ENST00000411290 116 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 TPMTP2-201ENST00000414372 726 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AL807761.1-201ENST00000417622 171 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 RPL7P30-201ENST00000420888 709 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC019178.2-201ENST00000423595 505 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 ZYG11AP1-201ENST00000430329 837 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 FTH1P6-201ENST00000430768 320 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 RPL7P34-201ENST00000433316 712 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 RPL23AP35-201ENST00000451906 501 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AL445669.2-201ENST00000454425 421 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 RPS20P32-201ENST00000456044 356 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC099563.1-201ENST00000456086 418 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AP000873.1-201ENST00000463987 400 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AHI1-208ENST00000488690 712 ntTSL 5 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC026784.1-201ENST00000507986 352 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC010625.1-201ENST00000511296 403 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 RNA5SP315-201ENST00000516340 116 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 RNA5SP312-201ENST00000517068 116 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AP000926.4-201ENST00000527351 454 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC092851.1-201ENST00000535964 478 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC024224.1-201ENST00000538284 609 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC008011.1-201ENST00000545989 227 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AL121766.1-201ENST00000547436 487 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 ELOCP32-201ENST00000548625 324 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 EEF1B2P4-201ENST00000551398 348 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 MIR5186-201ENST00000577504 120 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 MIR4999-201ENST00000585029 91 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC021171.1-201ENST00000603137 706 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AL596327.1-201ENST00000603629 213 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AL357094.1-201ENST00000603845 844 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 U7.8-201ENST00000619968 63 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC079416.3-201ENST00000624479 549 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC079228.1-201ENST00000624774 1049 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AL732372.2-225ENST00000642124 456 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 AC097714.1-201ENST00000511272 1647 ntBASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LIMA1Q9UHB6 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC126755.2-208ENST00000327792 462 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms