Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 UQCRC2P1-201ENST00000417777 1332 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 SNORA73.1-201ENST00000363107 205 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 Y_RNA.431-201ENST00000384086 102 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 RNU6-1226P-201ENST00000384317 107 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AC068050.1-201ENST00000394891 380 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 RPL7P60-201ENST00000397636 735 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 RNU6-1068P-201ENST00000410958 103 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 RPL6P29-201ENST00000414863 865 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AL354766.1-201ENST00000423396 542 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AC005534.2-201ENST00000431047 433 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 ATP5JP1-201ENST00000431631 322 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AC093156.1-201ENST00000440382 670 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AC114495.1-201ENST00000441274 436 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 MED28P3-201ENST00000444288 531 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 DDX3P2-201ENST00000446138 111 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 RPL7P12-201ENST00000446719 750 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AC093767.1-201ENST00000504523 156 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AC091868.1-201ENST00000508746 304 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 SNORA19.2-201ENST00000516013 114 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 RNU6-410P-201ENST00000517006 107 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AC007224.1-201ENST00000564410 144 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 MIR3146-201ENST00000580367 79 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 NF1P5-201ENST00000588287 448 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 Z84480.1-201ENST00000605131 311 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AL050343.2-201ENST00000607338 280 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AL596245.1-201ENST00000618994 362 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 AC009951.1-201ENST00000623674 2614 ntBASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC6.16□□□□□ -1.42
CCDC87Q9NVE4 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 SYF2-202ENST00000354361 926 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 RNU6-359P-201ENST00000365466 108 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 Y_RNA.381-201ENST00000365666 102 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 RNU6-1293P-201ENST00000384077 107 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 RNU6-510P-201ENST00000391239 108 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 AL590004.1-201ENST00000405321 300 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 AC009161.1-201ENST00000417306 376 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 BTF3L4P3-201ENST00000418879 476 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 RPL35AP12-201ENST00000425362 338 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 MTCO3P46-201ENST00000425787 232 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 SAR1AP4-201ENST00000429225 591 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 AL356010.1-201ENST00000456364 102 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 RNU7-63P-201ENST00000459054 62 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 NIP7P2-201ENST00000485801 544 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 RPL21P129-201ENST00000491732 478 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 RPL38P4-201ENST00000502376 214 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 AC078814.3-201ENST00000553036 491 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 MIR5699-201ENST00000578903 90 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 AC098848.2-201ENST00000588023 330 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 AC068790.3-201ENST00000602988 553 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 AL121932.1-201ENST00000605542 214 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 MIR6864-201ENST00000617935 70 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 RNU6-156P-201ENST00000621869 107 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 AC079597.1-201ENST00000624306 508 ntBASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC87Q9NVE4 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC87Q9NVE4 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.15□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms