Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 uc_338.11-201ENST00000619132 160 ntBASIC5.56□□□□□ -1.52
TRIM56Q9BRZ2 AL713922.2-201ENST00000619384 716 ntBASIC5.56□□□□□ -1.52
TRIM56Q9BRZ2 AL359757.2-201ENST00000624309 274 ntBASIC5.56□□□□□ -1.52
TRIM56Q9BRZ2 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM56Q9BRZ2 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM56Q9BRZ2 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.56□□□□□ -1.52
TRIM56Q9BRZ2 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM56Q9BRZ2 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.56□□□□□ -1.52
TRIM56Q9BRZ2 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM56Q9BRZ2 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.56□□□□□ -1.52
TRIM56Q9BRZ2 DHX40P1-201ENST00000588725 1412 ntBASIC5.56□□□□□ -1.52
TRIM56Q9BRZ2 AL672167.1-205ENST00000641112 3080 ntBASIC5.56□□□□□ -1.52
TRIM56Q9BRZ2 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM56Q9BRZ2 OR9K1P-202ENST00000641111 3217 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 ZNF734P-201ENST00000419494 1534 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AL022322.2-201ENST00000624072 20397 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 SNORA62.1-201ENST00000364287 154 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 RNVU1-3-201ENST00000364313 161 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 RNU6-146P-201ENST00000384602 108 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 MIR143-201ENST00000385300 106 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 ENSAP1-201ENST00000392855 326 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 RPS4XP9-201ENST00000405151 780 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 RN7SKP286-201ENST00000410894 299 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 RPL12P34-201ENST00000424532 479 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AC005517.2-201ENST00000424673 553 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 RPL21P89-201ENST00000444021 467 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 RAC1P7-201ENST00000445367 377 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 RN7SL717P-201ENST00000478343 297 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AC116562.3-201ENST00000506136 177 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AC093303.1-201ENST00000514549 295 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 RNU6-941P-201ENST00000516346 108 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 Y_RNA.682-201ENST00000516457 100 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 RN7SKP99-201ENST00000517028 307 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AC068587.5-201ENST00000528506 175 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AP005435.4-201ENST00000529514 284 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 OR5B10P-201ENST00000532869 642 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AC063950.1-201ENST00000552036 308 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AL049794.2-201ENST00000616301 365 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AL161637.1-201ENST00000622380 412 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AC138965.3-201ENST00000623875 498 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 AC066616.2-201ENST00000559334 1481 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 MTND4P14-201ENST00000435799 1354 ntBASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM56Q9BRZ2 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.54□□□□□ -1.52
TRIM56Q9BRZ2 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
TRIM56Q9BRZ2 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM56Q9BRZ2 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM56Q9BRZ2 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM56Q9BRZ2 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.54□□□□□ -1.52
TRIM56Q9BRZ2 MIR375-201ENST00000362103 64 ntBASIC5.54□□□□□ -1.52
TRIM56Q9BRZ2 Y_RNA.28-201ENST00000362554 111 ntBASIC5.54□□□□□ -1.52
TRIM56Q9BRZ2 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM56Q9BRZ2 RNU6-641P-201ENST00000384006 107 ntBASIC5.54□□□□□ -1.52
TRIM56Q9BRZ2 SNORD56.6-201ENST00000384569 71 ntBASIC5.54□□□□□ -1.52
TRIM56Q9BRZ2 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
TRIM56Q9BRZ2 MIR548K-201ENST00000408406 116 ntBASIC5.54□□□□□ -1.52
TRIM56Q9BRZ2 MIR548F5-201ENST00000408421 86 ntBASIC5.54□□□□□ -1.52
TRIM56Q9BRZ2 RNU6-370P-201ENST00000411008 104 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 135.2 ms