Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 U6.105-201ENST00000637379 88 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AL359893.1-201ENST00000447628 1580 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC3Q9BQI4 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 RNU6-730P-201ENST00000383954 104 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 MIR218-2-201ENST00000385006 110 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AL024474.1-201ENST00000404655 591 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 MIR1250-201ENST00000408098 113 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 RNA5SP306-201ENST00000411087 107 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AC093698.1-201ENST00000423843 571 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 USP9YP7-201ENST00000436723 430 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 MTND3P1-201ENST00000441336 220 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 RPS3AP12-201ENST00000443616 753 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 RPS3AP46-201ENST00000448352 682 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AC104978.1-201ENST00000449387 391 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 RPL26P28-201ENST00000451325 435 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 USP9YP32-201ENST00000452432 430 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 TRGVB-201ENST00000453257 471 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 UBDP1-202ENST00000457888 382 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 MTND1P16-201ENST00000465177 898 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 PLGLA-201ENST00000465668 449 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 RPL7P24-201ENST00000493052 752 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AC106872.2-201ENST00000494303 480 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AC012170.1-201ENST00000495139 359 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AC139783.2-201ENST00000504847 1145 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 SNORA3.4-201ENST00000515969 96 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 RNU4-60P-201ENST00000517239 135 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 HSPA8P13-201ENST00000523715 472 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 OR4G1P-201ENST00000588632 938 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AL355812.1-201ENST00000603215 216 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AC004987.4-201ENST00000603383 338 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 LLPHP1-201ENST00000603571 367 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AL513477.2-201ENST00000607858 568 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AC069209.1-201ENST00000619282 651 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AL713922.2-201ENST00000619384 716 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 AL079343.1-201ENST00000572358 1771 ntBASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC3Q9BQI4 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 RNU6-525P-201ENST00000363685 104 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 RNU6-356P-201ENST00000384140 107 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 RPL7P60-201ENST00000397636 735 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 HMGB1P17-201ENST00000403495 628 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 ATP5A1P2-201ENST00000412323 255 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AL391219.1-201ENST00000422570 483 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 PSMA2P3-201ENST00000429685 675 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 YWHAZP7-201ENST00000436906 631 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 MTND4P6-201ENST00000438297 472 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 MTCYBP31-201ENST00000438855 1122 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 RPL12P26-201ENST00000452430 487 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 MTCYBP35-201ENST00000503630 1137 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC114981.1-201ENST00000503897 678 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 RNU6-583P-201ENST00000516012 92 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 Vault.1-201ENST00000516474 102 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 RNA5SP309-201ENST00000516670 106 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 DUXAP5-201ENST00000529668 529 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms