Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC241584.1-201ENST00000438469 1241 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 AL592437.1-201ENST00000443781 492 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC140076.1-201ENST00000449897 361 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 RPL12P26-201ENST00000452430 487 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 RPS4XP2-201ENST00000458402 793 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC069306.1-201ENST00000507006 843 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC110768.1-201ENST00000509222 400 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS39Q96JC1 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 RNU6-885P-201ENST00000516607 104 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC093331.1-201ENST00000521474 169 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 SULT1C2P1-202ENST00000562418 459 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 FAM60BP-201ENST00000578364 658 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC093227.2-201ENST00000589357 285 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 DNAJC19P3-201ENST00000594491 331 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC009220.3-201ENST00000604318 586 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 AL451074.6-201ENST00000608512 729 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 MIR7851-201ENST00000610611 160 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 VN1R74P-201ENST00000613259 503 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC008759.3-201ENST00000613300 508 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC008121.2-201ENST00000614647 523 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC093875.1-201ENST00000623688 504 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC090897.3-201ENST00000636973 1157 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC139713.2-210ENST00000641741 992 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
VPS39Q96JC1 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
VPS39Q96JC1 RIOK3P1-201ENST00000418778 1528 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS39Q96JC1 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
VPS39Q96JC1 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.48□□□□□ -1.85
VPS39Q96JC1 ZNF826P-207ENST00000622273 1910 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 GDI2P1-201ENST00000429312 1336 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS39Q96JC1 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS39Q96JC1 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS39Q96JC1 RNU1-64P-201ENST00000365443 163 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
VPS39Q96JC1 SAR1AP2-201ENST00000392696 594 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC092447.6-201ENST00000414578 210 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC092017.2-201ENST00000427600 362 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 MTATP6P4-201ENST00000427725 675 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 AP000907.1-201ENST00000428428 510 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 MTND4LP10-201ENST00000435146 291 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 RPL21P133-201ENST00000443666 476 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC006539.3-201ENST00000454258 129 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC010401.1-201ENST00000463867 348 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 SUMO2P5-201ENST00000506790 245 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS39Q96JC1 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS39Q96JC1 MTCO1P49-201ENST00000523429 802 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS39Q96JC1 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC3.48□□□□□ -1.85
VPS39Q96JC1 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC106785.1-201ENST00000565935 262 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC006116.10-201ENST00000591836 581 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC010738.1-201ENST00000604970 987 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC007275.1-201ENST00000621243 671 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 U4.6-201ENST00000621618 127 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC126544.2-201ENST00000625174 749 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC006927.2-201ENST00000639256 389 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
VPS39Q96JC1 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS39Q96JC1 AL513302.2-201ENST00000562313 1842 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.48□□□□□ -1.85
VPS39Q96JC1 AC093908.1-201ENST00000623125 8092 ntBASIC3.48□□□□□ -1.85
VPS39Q96JC1 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 ZNF542P-204ENST00000482727 1305 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 AL079305.1-201ENST00000623159 3008 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
VPS39Q96JC1 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
VPS39Q96JC1 ZNF736P7Y-201ENST00000425158 820 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 GOT2P5-201ENST00000433995 546 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 TRIM60P18-201ENST00000441518 828 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 RNF2P1-201ENST00000442955 1010 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 AC108043.1-201ENST00000512696 574 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 AC010374.2-201ENST00000512933 535 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms