Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC2.07□□□□□ -2.08
USF3Q68DE3 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
USF3Q68DE3 MIR6073-201ENST00000352083 89 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 RNU1-73P-201ENST00000383971 164 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.07□□□□□ -2.08
USF3Q68DE3 RNA5SP344-201ENST00000411081 104 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 AC080125.1-201ENST00000414888 684 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.07□□□□□ -2.08
USF3Q68DE3 AL357520.1-201ENST00000441557 453 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 RPL9P32-201ENST00000464118 620 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 AC234781.5-201ENST00000508429 271 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.07□□□□□ -2.08
USF3Q68DE3 AC010265.1-201ENST00000513509 211 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 ACTR6P1-201ENST00000514311 1104 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 AL133271.1-201ENST00000538229 291 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC2.07□□□□□ -2.08
USF3Q68DE3 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
USF3Q68DE3 AC097714.1-201ENST00000511272 1647 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 MTCO1P9-201ENST00000505577 1534 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
USF3Q68DE3 RNU6-482P-201ENST00000391068 107 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 RNA5SP181-201ENST00000410246 98 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 CR769767.1-201ENST00000436337 346 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 RPS27P5-201ENST00000444247 244 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 CKS1BP2-201ENST00000497342 240 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 AC008716.1-201ENST00000511084 513 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 OR5D17P-201ENST00000531492 978 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.06□□□□□ -2.08
USF3Q68DE3 AC046143.2-201ENST00000609789 160 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 BX664608.1-201ENST00000610519 487 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 AC099063.3-201ENST00000642066 185 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 AP001486.2-201ENST00000561652 5113 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.06□□□□□ -2.08
USF3Q68DE3 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.06□□□□□ -2.08
USF3Q68DE3 AL445437.1-201ENST00000623157 3087 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 RPL21P132-201ENST00000331267 462 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 DYNLT3P1-201ENST00000378574 347 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 AL359511.1-201ENST00000402970 211 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 AL162578.1-201ENST00000406202 378 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 DHFRP5-201ENST00000406944 564 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 Z98742.3-201ENST00000418637 326 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 TRGV5P-201ENST00000419915 354 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.06□□□□□ -2.08
USF3Q68DE3 RPS24P8-201ENST00000431490 402 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 RNA5SP458-201ENST00000516188 119 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC2.06□□□□□ -2.08
USF3Q68DE3 AC021269.2-201ENST00000532318 330 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
USF3Q68DE3 NTAN1P1-201ENST00000603150 646 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 AC123768.4-201ENST00000616244 701 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.06□□□□□ -2.08
USF3Q68DE3 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
USF3Q68DE3 Z73965.1-201ENST00000623412 2297 ntBASIC2.06□□□□□ -2.08
USF3Q68DE3 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
USF3Q68DE3 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.05□□□□□ -2.08
USF3Q68DE3 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
USF3Q68DE3 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
USF3Q68DE3 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
USF3Q68DE3 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
USF3Q68DE3 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.05□□□□□ -2.08
USF3Q68DE3 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC2.05□□□□□ -2.08
USF3Q68DE3 RPL9P6-201ENST00000492764 598 ntBASIC2.05□□□□□ -2.08
USF3Q68DE3 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC2.05□□□□□ -2.08
USF3Q68DE3 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
USF3Q68DE3 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
USF3Q68DE3 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
USF3Q68DE3 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC2.05□□□□□ -2.08
USF3Q68DE3 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.05□□□□□ -2.08
USF3Q68DE3 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.05□□□□□ -2.08
USF3Q68DE3 RN7SKP32-201ENST00000410167 303 ntBASIC2.05□□□□□ -2.08
USF3Q68DE3 AC007064.1-201ENST00000412238 351 ntBASIC2.05□□□□□ -2.08
USF3Q68DE3 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.05□□□□□ -2.08
USF3Q68DE3 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC2.05□□□□□ -2.08
USF3Q68DE3 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.05□□□□□ -2.08
USF3Q68DE3 AC123904.3-201ENST00000547218 814 ntBASIC2.05□□□□□ -2.08
USF3Q68DE3 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.05□□□□□ -2.08
USF3Q68DE3 MAGOH2P-202ENST00000584384 429 ntBASIC2.05□□□□□ -2.08
USF3Q68DE3 AC025811.1-201ENST00000604312 472 ntBASIC2.05□□□□□ -2.08
USF3Q68DE3 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
USF3Q68DE3 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
USF3Q68DE3 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.04□□□□□ -2.08
USF3Q68DE3 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
USF3Q68DE3 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
USF3Q68DE3 MTND5P7-201ENST00000413558 1798 ntBASIC2.04□□□□□ -2.08
USF3Q68DE3 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
USF3Q68DE3 RPL7P53-201ENST00000421245 739 ntBASIC2.04□□□□□ -2.08
USF3Q68DE3 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
USF3Q68DE3 NDUFS5P3-201ENST00000450668 321 ntBASIC2.04□□□□□ -2.08
USF3Q68DE3 AC116337.1-201ENST00000509680 687 ntBASIC2.04□□□□□ -2.08
USF3Q68DE3 IGHV3-76-201ENST00000522465 295 ntBASIC2.04□□□□□ -2.08
USF3Q68DE3 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
USF3Q68DE3 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
USF3Q68DE3 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
USF3Q68DE3 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.03□□□□□ -2.08
USF3Q68DE3 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.03□□□□□ -2.08
USF3Q68DE3 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
USF3Q68DE3 VN1R48P-201ENST00000448149 1036 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 AC025181.1-201ENST00000477507 416 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 RNU6-964P-201ENST00000516524 69 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 AC010620.2-201ENST00000600135 313 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms