Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 RNA5SP380-201ENST00000517190 98 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AC026403.1-201ENST00000518938 295 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 MTCO1P49-201ENST00000523429 802 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AC005476.1-201ENST00000554427 397 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AC122134.1-202ENST00000569111 1201 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AC006130.2-201ENST00000586202 326 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AP003973.1-201ENST00000604639 691 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 DPRXP5-201ENST00000604662 539 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AL512506.2-201ENST00000624472 458 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AC012442.3-202ENST00000636742 206 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AL392088.2-201ENST00000637607 285 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.65□□□□□ -1.82
CCDC40Q4G0X9 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC40Q4G0X9 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC40Q4G0X9 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.65□□□□□ -1.82
CCDC40Q4G0X9 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 RNU6-50P-201ENST00000362356 103 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 RNA5SP258-201ENST00000362750 119 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 DEFB109C-201ENST00000382575 264 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 DEFB109B-201ENST00000382656 264 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 MIR134-201ENST00000385258 73 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 RPL31P1-201ENST00000398116 372 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 RPL7P27-201ENST00000403775 720 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AL133384.1-201ENST00000412744 351 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 BOLA3P4-201ENST00000418151 400 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AC245291.1-201ENST00000419501 328 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 FTH1P1-201ENST00000437933 532 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AL359073.1-201ENST00000448036 403 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 RPL26P28-201ENST00000451325 435 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 MRPL42P4-201ENST00000453267 443 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AC010301.1-201ENST00000473936 355 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 IGHV3-76-201ENST00000522465 295 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AC068339.2-201ENST00000534395 618 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 MIR3922-201ENST00000585192 84 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AC068620.3-201ENST00000602749 560 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AL355812.1-201ENST00000603215 216 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 SNORD39.4-201ENST00000620099 78 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AL356321.1-201ENST00000621360 228 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 SNORA50A-202ENST00000629536 136 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AC244258.1-201ENST00000637553 1071 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 SRP72P2-201ENST00000344851 1979 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AL136520.1-201ENST00000600311 1322 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AL161912.2-201ENST00000565707 3007 ntBASIC3.65□□□□□ -1.83
CCDC40Q4G0X9 AC004925.1-201ENST00000624256 2706 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 MIR148B-201ENST00000362252 99 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 BTF3P8-201ENST00000414577 526 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AC012065.2-201ENST00000421295 375 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 ZNF736P7Y-201ENST00000425158 820 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms