Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MTATP6P18-201ENST00000417994 673 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 RPS15AP12-201ENST00000419498 388 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 USP9YP9-201ENST00000429406 715 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 AC119618.1-201ENST00000434191 222 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA4Q00056 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA4Q00056 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA4Q00056 OR1H1P-201ENST00000448731 937 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 AC022364.2-201ENST00000457963 554 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 snoU13.8-201ENST00000458890 104 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 RN7SL517P-201ENST00000462240 305 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 RPS20P21-201ENST00000466859 343 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 RPL36AP51-201ENST00000487216 318 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA4Q00056 RNA5SP249-201ENST00000516127 99 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXA4Q00056 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA4Q00056 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.01□□□□□ -1.77
HOXA4Q00056 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA4Q00056 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXA4Q00056 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA4Q00056 AC105129.1-201ENST00000560250 297 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA4Q00056 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.01□□□□□ -1.77
HOXA4Q00056 AL117336.2-201ENST00000602435 335 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 AL162413.1-201ENST00000603198 110 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 Z84480.1-201ENST00000605131 311 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 AC008966.2-201ENST00000606157 453 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 AC019193.2-201ENST00000610012 634 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA4Q00056 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
HOXA4Q00056 AC015914.2-201ENST00000618167 288 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA4Q00056 AC009161.2-201ENST00000624626 138 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 FER-210ENST00000628534 558 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA4Q00056 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXA4Q00056 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA4Q00056 AC139713.2-215ENST00000641428 5037 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 AC011978.2-201ENST00000569835 2054 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 AL445437.1-201ENST00000623157 3087 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 AC006484.1-201ENST00000435086 1884 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA4Q00056 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXA4Q00056 SCN1A-220ENST00000641603 12506 ntBASIC4□□□□□ -1.77
HOXA4Q00056 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4□□□□□ -1.77
HOXA4Q00056 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
HOXA4Q00056 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXA4Q00056 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
HOXA4Q00056 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXA4Q00056 OR52B1P-201ENST00000316506 909 ntBASIC4□□□□□ -1.77
HOXA4Q00056 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4□□□□□ -1.77
HOXA4Q00056 SNORD56.2-201ENST00000363242 71 ntBASIC4□□□□□ -1.77
HOXA4Q00056 RNU6-1322P-201ENST00000364309 107 ntBASIC4□□□□□ -1.77
HOXA4Q00056 Y_RNA.813-201ENST00000364639 102 ntBASIC4□□□□□ -1.77
HOXA4Q00056 RNU6-761P-201ENST00000384148 107 ntBASIC4□□□□□ -1.77
HOXA4Q00056 RNU6-1009P-201ENST00000390996 107 ntBASIC4□□□□□ -1.77
HOXA4Q00056 RPS4XP8-201ENST00000402039 771 ntBASIC4□□□□□ -1.77
HOXA4Q00056 AL049697.2-201ENST00000403708 294 ntBASIC4□□□□□ -1.77
HOXA4Q00056 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC4□□□□□ -1.77
HOXA4Q00056 AC004987.3-201ENST00000413879 771 ntBASIC4□□□□□ -1.77
HOXA4Q00056 EIF4HP2-201ENST00000424380 563 ntBASIC4□□□□□ -1.77
HOXA4Q00056 OR2AH1P-201ENST00000425717 928 ntBASIC4□□□□□ -1.77
HOXA4Q00056 AL606489.2-201ENST00000433886 234 ntBASIC4□□□□□ -1.77
HOXA4Q00056 AC005154.2-201ENST00000438110 379 ntBASIC4□□□□□ -1.77
HOXA4Q00056 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4□□□□□ -1.77
HOXA4Q00056 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4□□□□□ -1.77
HOXA4Q00056 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4□□□□□ -1.77
HOXA4Q00056 MTND4LP16-201ENST00000440828 295 ntBASIC4□□□□□ -1.77
HOXA4Q00056 AC114495.1-201ENST00000441274 436 ntBASIC4□□□□□ -1.77
HOXA4Q00056 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4□□□□□ -1.77
HOXA4Q00056 MTND1P11-201ENST00000456661 876 ntBASIC4□□□□□ -1.77
HOXA4Q00056 RPS4XP10-201ENST00000465034 731 ntBASIC4□□□□□ -1.77
HOXA4Q00056 RN7SL354P-201ENST00000469282 294 ntBASIC4□□□□□ -1.77
HOXA4Q00056 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4□□□□□ -1.77
HOXA4Q00056 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4□□□□□ -1.77
HOXA4Q00056 RPL23AP72-201ENST00000492447 435 ntBASIC4□□□□□ -1.77
HOXA4Q00056 AC008897.1-201ENST00000494006 347 ntBASIC4□□□□□ -1.77
HOXA4Q00056 HMGB1P21-201ENST00000502313 581 ntBASIC4□□□□□ -1.77
HOXA4Q00056 SCARNA22-201ENST00000503991 125 ntBASIC4□□□□□ -1.77
HOXA4Q00056 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4□□□□□ -1.77
HOXA4Q00056 RNA5SP337-201ENST00000517007 109 ntBASIC4□□□□□ -1.77
HOXA4Q00056 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4□□□□□ -1.77
HOXA4Q00056 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4□□□□□ -1.77
HOXA4Q00056 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4□□□□□ -1.77
HOXA4Q00056 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4□□□□□ -1.77
HOXA4Q00056 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4□□□□□ -1.77
HOXA4Q00056 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4□□□□□ -1.77
HOXA4Q00056 AP003497.1-201ENST00000528472 562 ntBASIC4□□□□□ -1.77
HOXA4Q00056 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4□□□□□ -1.77
HOXA4Q00056 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4□□□□□ -1.77
HOXA4Q00056 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4□□□□□ -1.77
HOXA4Q00056 MIR3146-201ENST00000580367 79 ntBASIC4□□□□□ -1.77
HOXA4Q00056 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4□□□□□ -1.77
HOXA4Q00056 MIR4737-201ENST00000583979 81 ntBASIC4□□□□□ -1.77
HOXA4Q00056 AC006363.1-201ENST00000603806 463 ntBASIC4□□□□□ -1.77
HOXA4Q00056 AL009028.1-201ENST00000604895 802 ntBASIC4□□□□□ -1.77
HOXA4Q00056 TUG1_1.1-201ENST00000610654 145 ntBASIC4□□□□□ -1.77
HOXA4Q00056 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4□□□□□ -1.77
HOXA4Q00056 MIR6853-201ENST00000619642 74 ntBASIC4□□□□□ -1.77
HOXA4Q00056 MIR6730-201ENST00000622213 67 ntBASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms