Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC123904.3-201ENST00000547218 814 ntBASIC3.15□□□□□ -1.91
COL18A1P39060 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.15□□□□□ -1.91
COL18A1P39060 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.15□□□□□ -1.91
COL18A1P39060 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC3.15□□□□□ -1.91
COL18A1P39060 NRBF2P1-201ENST00000587407 859 ntBASIC3.15□□□□□ -1.91
COL18A1P39060 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.15□□□□□ -1.91
COL18A1P39060 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.15□□□□□ -1.91
COL18A1P39060 AL590410.1-201ENST00000617925 333 ntBASIC3.15□□□□□ -1.91
COL18A1P39060 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
COL18A1P39060 AL162578.1-201ENST00000406202 378 ntBASIC3.14□□□□□ -1.91
COL18A1P39060 Z98742.2-201ENST00000431564 187 ntBASIC3.14□□□□□ -1.91
COL18A1P39060 MTND2P2-201ENST00000434633 945 ntBASIC3.14□□□□□ -1.91
COL18A1P39060 HMGB1P15-201ENST00000453854 435 ntBASIC3.14□□□□□ -1.91
COL18A1P39060 RPL23AP14-201ENST00000468281 468 ntBASIC3.14□□□□□ -1.91
COL18A1P39060 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC3.14□□□□□ -1.91
COL18A1P39060 AC112673.1-201ENST00000513168 575 ntBASIC3.14□□□□□ -1.91
COL18A1P39060 RNU6-548P-201ENST00000517083 115 ntBASIC3.14□□□□□ -1.91
COL18A1P39060 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.14□□□□□ -1.91
COL18A1P39060 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.14□□□□□ -1.91
COL18A1P39060 AC007342.7-201ENST00000624610 2337 ntBASIC3.14□□□□□ -1.91
COL18A1P39060 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL18A1P39060 OR4G2P-202ENST00000641004 1759 ntBASIC3.13□□□□□ -1.91
COL18A1P39060 RNU6-253P-201ENST00000384730 105 ntBASIC3.13□□□□□ -1.91
COL18A1P39060 FAT1P1-201ENST00000406588 507 ntBASIC3.13□□□□□ -1.91
COL18A1P39060 VTA1P1-201ENST00000414044 866 ntBASIC3.13□□□□□ -1.91
COL18A1P39060 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.13□□□□□ -1.91
COL18A1P39060 AC104389.3-201ENST00000445629 235 ntBASIC3.13□□□□□ -1.91
COL18A1P39060 RPL23AP49-201ENST00000492925 468 ntBASIC3.13□□□□□ -1.91
COL18A1P39060 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.13□□□□□ -1.91
COL18A1P39060 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL18A1P39060 AC012213.4-201ENST00000606457 354 ntBASIC3.13□□□□□ -1.91
COL18A1P39060 AP006248.2-201ENST00000623309 592 ntBASIC3.13□□□□□ -1.91
COL18A1P39060 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.13□□□□□ -1.91
COL18A1P39060 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL18A1P39060 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
COL18A1P39060 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL18A1P39060 AL591416.1-201ENST00000404015 867 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 MTCYBP7-201ENST00000419540 1134 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
COL18A1P39060 RPL31P53-201ENST00000457065 348 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 AC106872.3-201ENST00000495104 446 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.12□□□□□ -1.91
COL18A1P39060 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
COL18A1P39060 RNA5SP380-201ENST00000517190 98 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.12□□□□□ -1.91
COL18A1P39060 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC3.12□□□□□ -1.91
COL18A1P39060 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.12□□□□□ -1.91
COL18A1P39060 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC3.12□□□□□ -1.91
COL18A1P39060 AC123786.2-201ENST00000603459 275 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 AC016727.1-205ENST00000605437 569 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 AC034236.3-201ENST00000605999 461 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 AC107871.2-201ENST00000612894 502 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 AL136981.2-201ENST00000617319 734 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL18A1P39060 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL18A1P39060 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
COL18A1P39060 RNU6-146P-201ENST00000384602 108 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.12□□□□□ -1.91
COL18A1P39060 AL606490.7-201ENST00000433136 191 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 LINC00888-204ENST00000487386 421 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 AP001086.1-201ENST00000494882 321 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC3.12□□□□□ -1.91
COL18A1P39060 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC3.12□□□□□ -1.91
COL18A1P39060 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.12□□□□□ -1.91
COL18A1P39060 VWA8P1-201ENST00000510889 176 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC3.12□□□□□ -1.91
COL18A1P39060 AC068446.3-201ENST00000555285 382 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC3.12□□□□□ -1.91
COL18A1P39060 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC3.12□□□□□ -1.91
COL18A1P39060 AC110994.2-201ENST00000635481 492 ntBASIC3.12□□□□□ -1.91
COL18A1P39060 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL18A1P39060 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3.12□□□□□ -1.91
COL18A1P39060 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL18A1P39060 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL18A1P39060 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
COL18A1P39060 AL592437.2-201ENST00000421655 2434 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.11□□□□□ -1.91
COL18A1P39060 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.11□□□□□ -1.91
COL18A1P39060 AC002543.1-201ENST00000299783 1954 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL18A1P39060 AL161781.1-201ENST00000354277 403 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 Y_RNA.226-201ENST00000364337 114 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 AL023284.1-201ENST00000403956 276 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 AC245517.2-201ENST00000442890 346 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 CASP3P1-201ENST00000446037 609 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC3.11□□□□□ -1.91
COL18A1P39060 HNRNPDLP3-201ENST00000456745 380 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 MTCYBP19-201ENST00000517463 1124 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 OR7K1P-201ENST00000546439 926 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 OR11H5P-201ENST00000554039 926 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.11□□□□□ -1.91
COL18A1P39060 AADACP1-206ENST00000561502 1193 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 MIR5007-201ENST00000583098 95 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 BNIP3P8-201ENST00000597863 560 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 MIR6715B-201ENST00000637172 77 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.11□□□□□ -1.91
COL18A1P39060 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
COL18A1P39060 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
COL18A1P39060 ZNF355P-201ENST00000427301 3216 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms