Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AP001207.1-201ENST00000524051 481 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXC9P31274 AC024224.1-201ENST00000538284 609 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXC9P31274 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXC9P31274 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXC9P31274 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXC9P31274 MIR4716-201ENST00000579628 84 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXC9P31274 AC025588.2-201ENST00000604851 466 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 AC123768.4-201ENST00000616244 701 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXC9P31274 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXC9P31274 SNORD39.4-201ENST00000620099 78 ntBASIC4.33□□□□□ -1.72
HOXC9P31274 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXC9P31274 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXC9P31274 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXC9P31274 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXC9P31274 AL118496.1-201ENST00000440201 1812 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXC9P31274 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXC9P31274 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXC9P31274 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXC9P31274 SNORA7.4-201ENST00000384249 137 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 TMSB4XP8-201ENST00000402089 135 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 AL136116.1-201ENST00000403591 381 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 RPL5P18-201ENST00000406671 891 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 TMSB4XP6-201ENST00000415187 135 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 AL008987.1-201ENST00000415528 237 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 ELOCP9-201ENST00000418624 239 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 AC007435.1-201ENST00000421086 415 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXC9P31274 TMSB4XP1-201ENST00000424567 135 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 BX890604.2-201ENST00000427883 474 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXC9P31274 YWHAZP8-201ENST00000436935 731 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 FGF7P5-201ENST00000441829 291 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXC9P31274 RPS15AP1-201ENST00000457423 391 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 ACTG1P13-201ENST00000486987 1043 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXC9P31274 AC097462.2-201ENST00000504623 481 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 AC008885.1-201ENST00000514930 301 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 RN7SKP96-201ENST00000516948 297 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 MTCO2P15-201ENST00000532655 656 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 AC084757.1-201ENST00000559987 490 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 AC090695.1-201ENST00000561269 1222 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXC9P31274 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXC9P31274 BNIP3P11-201ENST00000603878 563 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
HOXC9P31274 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXC9P31274 AC022509.4-201ENST00000621404 572 ntBASIC4.32□□□□□ -1.72
HOXC9P31274 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXC9P31274 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXC9P31274 AC017071.1-201ENST00000564407 2204 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXC9P31274 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
HOXC9P31274 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXC9P31274 MTND4P8-201ENST00000514997 1362 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 RNU6-582P-201ENST00000362989 107 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC4.31□□□□□ -1.72
HOXC9P31274 SNORA54-201ENST00000384281 123 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 AL138885.1-201ENST00000405921 675 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 HNRNPDP2-201ENST00000406475 478 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 AL133264.1-201ENST00000407157 562 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 MTND2P16-201ENST00000419987 799 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 COTL1P1-201ENST00000422309 375 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 AC092447.3-201ENST00000426027 686 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXC9P31274 HSD52-202ENST00000436225 772 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXC9P31274 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXC9P31274 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXC9P31274 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXC9P31274 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXC9P31274 RPL23AP67-201ENST00000465341 474 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 VPS26AP1-201ENST00000483197 979 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 AC093755.1-201ENST00000512950 1023 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.31□□□□□ -1.72
HOXC9P31274 AC107934.2-201ENST00000518653 310 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 MRPS36P3-201ENST00000519284 130 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 UBL5P2-201ENST00000583788 219 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXC9P31274 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXC9P31274 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXC9P31274 uc_338.1-201ENST00000612113 180 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 AC107075.1-201ENST00000613695 314 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 uc_338.32-201ENST00000615087 172 ntBASIC4.31□□□□□ -1.72
HOXC9P31274 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
HOXC9P31274 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXC9P31274 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.31□□□□□ -1.72
HOXC9P31274 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXC9P31274 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXC9P31274 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXC9P31274 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXC9P31274 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXC9P31274 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXC9P31274 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXC9P31274 RNU1-140P-201ENST00000365040 165 ntBASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 124.6 ms