Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
PTPN4P29074 AL365440.1-201ENST00000436135 2167 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.53□□□□□ -1.84
PTPN4P29074 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
PTPN4P29074 RNA5SP72-201ENST00000364442 117 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.53□□□□□ -1.84
PTPN4P29074 SNORD116-23-201ENST00000384645 92 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 MIR122-201ENST00000385044 85 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 MIR591-201ENST00000385290 95 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
PTPN4P29074 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PTPN4P29074 MCTS2P-201ENST00000394552 546 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 MTCO1P56-201ENST00000401674 224 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 RPL23AP47-201ENST00000408017 460 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 RNU4-78P-201ENST00000410940 126 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 RNU6-575P-201ENST00000411326 105 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PTPN4P29074 BTF3P8-201ENST00000414577 526 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 AC017079.2-201ENST00000416102 485 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 AC245291.1-201ENST00000419501 328 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.53□□□□□ -1.84
PTPN4P29074 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.53□□□□□ -1.84
PTPN4P29074 BX890604.2-201ENST00000427883 474 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 AP000907.1-201ENST00000428428 510 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.53□□□□□ -1.84
PTPN4P29074 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.53□□□□□ -1.84
PTPN4P29074 MTCYBP42-201ENST00000444653 1130 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.53□□□□□ -1.84
PTPN4P29074 PRDX3P3-201ENST00000447765 522 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 MRPL42P4-201ENST00000453267 443 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.53□□□□□ -1.84
PTPN4P29074 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.53□□□□□ -1.84
PTPN4P29074 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.53□□□□□ -1.84
PTPN4P29074 AC011352.3-201ENST00000505162 593 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.53□□□□□ -1.84
PTPN4P29074 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PTPN4P29074 RNA5SP468-201ENST00000516782 93 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 MIR2276-201ENST00000516886 89 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 MTCO3P15-201ENST00000526563 574 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 HIGD1AP10-201ENST00000527837 282 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.53□□□□□ -1.84
PTPN4P29074 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.53□□□□□ -1.84
PTPN4P29074 YWHAZP1-201ENST00000556286 722 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.53□□□□□ -1.84
PTPN4P29074 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.53□□□□□ -1.84
PTPN4P29074 GAS5-AS1-201ENST00000602767 694 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.53□□□□□ -1.84
PTPN4P29074 AC025588.3-201ENST00000604182 274 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 AC012468.1-201ENST00000604888 430 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 AP005137.2-201ENST00000609238 400 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 AL354976.1-201ENST00000613843 387 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 AL157770.1-201ENST00000623049 439 ntBASIC3.53□□□□□ -1.84
PTPN4P29074 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.53□□□□□ -1.84
PTPN4P29074 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.53□□□□□ -1.84
PTPN4P29074 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.53□□□□□ -1.84
PTPN4P29074 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PTPN4P29074 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PTPN4P29074 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.52□□□□□ -1.85
PTPN4P29074 RNU6-582P-201ENST00000362989 107 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 RNU6-251P-201ENST00000363235 104 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 RNU6-263P-201ENST00000363811 107 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
PTPN4P29074 RNU6-339P-201ENST00000384310 107 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 RNU6-925P-201ENST00000384629 104 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 MIR183-201ENST00000384958 110 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 MIR218-2-201ENST00000385006 110 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 RNU6-298P-201ENST00000390888 96 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 ATP5A1P2-201ENST00000412323 255 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 RPS7P15-201ENST00000415804 584 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 MTND4P3-201ENST00000417829 541 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 AL049610.1-201ENST00000423374 372 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.52□□□□□ -1.85
PTPN4P29074 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.52□□□□□ -1.85
PTPN4P29074 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.52□□□□□ -1.85
PTPN4P29074 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
PTPN4P29074 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.52□□□□□ -1.85
PTPN4P29074 SNORD105B-201ENST00000458770 79 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 RN7SL330P-201ENST00000469709 307 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 AC010285.1-201ENST00000470580 392 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 RN7SL293P-201ENST00000481765 281 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 AC069528.1-202ENST00000482888 637 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 AC079203.1-201ENST00000487972 404 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 CAB39P1-201ENST00000502277 460 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 HMGB3P15-201ENST00000507326 574 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 AC109471.1-201ENST00000511631 612 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 RNU2-27P-201ENST00000516185 142 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 RNU6-579P-201ENST00000516879 102 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.52□□□□□ -1.85
PTPN4P29074 AC068657.1-201ENST00000520807 306 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 AC118942.1-201ENST00000529674 1035 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.52□□□□□ -1.85
PTPN4P29074 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.52□□□□□ -1.85
PTPN4P29074 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.52□□□□□ -1.85
PTPN4P29074 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.52□□□□□ -1.85
PTPN4P29074 RN7SL339P-201ENST00000580597 296 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 AL606834.3-201ENST00000602615 496 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.52□□□□□ -1.85
PTPN4P29074 AC011458.1-201ENST00000604034 617 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 AL159169.3-201ENST00000608871 561 ntBASIC3.52□□□□□ -1.85
PTPN4P29074 VIS1.1-201ENST00000610517 203 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms