Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 OFD1P13Y-201ENST00000431179 1232 ntBASIC4.83□□□□□ -1.64
SMARCA1P28370 MTND5P14-201ENST00000441481 1267 ntBASIC4.83□□□□□ -1.64
SMARCA1P28370 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC4.83□□□□□ -1.64
SMARCA1P28370 AC104073.1-201ENST00000451988 151 ntBASIC4.83□□□□□ -1.64
SMARCA1P28370 NDUFAF4P4-201ENST00000454883 502 ntBASIC4.83□□□□□ -1.64
SMARCA1P28370 OR9M1P-201ENST00000459641 921 ntBASIC4.83□□□□□ -1.64
SMARCA1P28370 RPL7P19-201ENST00000469948 618 ntBASIC4.83□□□□□ -1.64
SMARCA1P28370 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.83□□□□□ -1.64
SMARCA1P28370 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC4.83□□□□□ -1.64
SMARCA1P28370 AC096751.1-202ENST00000502691 1067 ntBASIC4.83□□□□□ -1.64
SMARCA1P28370 AC108941.1-201ENST00000502853 530 ntBASIC4.83□□□□□ -1.64
SMARCA1P28370 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.83□□□□□ -1.64
SMARCA1P28370 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.83□□□□□ -1.64
SMARCA1P28370 RNU6-405P-201ENST00000516637 110 ntBASIC4.83□□□□□ -1.64
SMARCA1P28370 MTND1P5-201ENST00000517906 940 ntBASIC4.83□□□□□ -1.64
SMARCA1P28370 MYL12AP1-201ENST00000518490 515 ntBASIC4.83□□□□□ -1.64
SMARCA1P28370 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC4.83□□□□□ -1.64
SMARCA1P28370 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.83□□□□□ -1.64
SMARCA1P28370 AP002748.2-201ENST00000528671 348 ntBASIC4.83□□□□□ -1.64
SMARCA1P28370 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.83□□□□□ -1.64
SMARCA1P28370 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.83□□□□□ -1.64
SMARCA1P28370 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.83□□□□□ -1.64
SMARCA1P28370 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC4.83□□□□□ -1.64
SMARCA1P28370 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.83□□□□□ -1.64
SMARCA1P28370 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SMARCA1P28370 AC026368.1-201ENST00000614934 690 ntBASIC4.83□□□□□ -1.64
SMARCA1P28370 MIR7151-201ENST00000617477 60 ntBASIC4.83□□□□□ -1.64
SMARCA1P28370 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
SMARCA1P28370 TEX21P-201ENST00000447107 1476 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SMARCA1P28370 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SMARCA1P28370 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.82□□□□□ -1.64
SMARCA1P28370 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SMARCA1P28370 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.82□□□□□ -1.64
SMARCA1P28370 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SMARCA1P28370 RNU6-289P-201ENST00000364093 107 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 SNORA70E-201ENST00000384492 135 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC4.82□□□□□ -1.64
SMARCA1P28370 OR8G2P-201ENST00000412796 908 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 RPL31P2-201ENST00000413849 377 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC4.82□□□□□ -1.64
SMARCA1P28370 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC4.82□□□□□ -1.64
SMARCA1P28370 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.82□□□□□ -1.64
SMARCA1P28370 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC4.82□□□□□ -1.64
SMARCA1P28370 RPL21P133-201ENST00000443666 476 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC4.82□□□□□ -1.64
SMARCA1P28370 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.82□□□□□ -1.64
SMARCA1P28370 AC239367.2-201ENST00000447309 705 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 AL121877.1-201ENST00000453704 622 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 TRBV26-201ENST00000456572 344 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.82□□□□□ -1.64
SMARCA1P28370 RPL31P50-201ENST00000471002 296 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 RPL21P103-201ENST00000479921 488 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC4.82□□□□□ -1.64
SMARCA1P28370 AC068587.1-201ENST00000483613 781 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 AC116347.2-201ENST00000514912 523 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 FABP5P5-201ENST00000515537 406 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.82□□□□□ -1.64
SMARCA1P28370 AP004247.1-201ENST00000531556 1289 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 AC013828.2-201ENST00000532487 235 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 TOMM20P2-201ENST00000540082 421 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.82□□□□□ -1.64
SMARCA1P28370 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.82□□□□□ -1.64
SMARCA1P28370 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.82□□□□□ -1.64
SMARCA1P28370 MTND6P33-201ENST00000571794 183 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 AL121834.1-201ENST00000572284 509 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 EIF1P4-201ENST00000572664 335 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SMARCA1P28370 AP001180.3-201ENST00000582221 145 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.82□□□□□ -1.64
SMARCA1P28370 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.82□□□□□ -1.64
SMARCA1P28370 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.82□□□□□ -1.64
SMARCA1P28370 BNIP3P23-201ENST00000599655 511 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 AC007566.2-201ENST00000603642 413 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.82□□□□□ -1.64
SMARCA1P28370 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 AC025588.4-201ENST00000615802 908 ntBASIC4.82□□□□□ -1.64
SMARCA1P28370 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC4.82□□□□□ -1.64
SMARCA1P28370 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SMARCA1P28370 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SMARCA1P28370 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SMARCA1P28370 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SMARCA1P28370 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SMARCA1P28370 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SMARCA1P28370 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
SMARCA1P28370 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SMARCA1P28370 AL022578.1-201ENST00000439330 1433 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMARCA1P28370 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMARCA1P28370 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMARCA1P28370 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMARCA1P28370 AC130650.2-201ENST00000618736 2403 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 RNU5E-5P-201ENST00000365379 116 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SMARCA1P28370 MIR320C1-201ENST00000408566 88 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC4.81□□□□□ -1.64
SMARCA1P28370 AC108032.1-201ENST00000416706 207 ntBASIC4.81□□□□□ -1.64
SMARCA1P28370 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.81□□□□□ -1.64
SMARCA1P28370 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC4.81□□□□□ -1.64
SMARCA1P28370 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 143 ms