Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA3O43365 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
HOXA3O43365 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXA3O43365 Y_RNA.162-201ENST00000363683 102 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 SNORA62.1-201ENST00000364287 154 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 RNU6-1078P-201ENST00000364522 103 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 RNU4-20P-201ENST00000365601 151 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 Y_RNA.394-201ENST00000383942 103 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 Y_RNA.431-201ENST00000384086 102 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 SNORD56.6-201ENST00000384569 71 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
HOXA3O43365 RNU6-903P-201ENST00000391270 109 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 RNU2-39P-201ENST00000410604 198 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 RN7SKP140-201ENST00000411196 284 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 RPL37P18-201ENST00000411602 243 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 NDUFB4P5-201ENST00000415445 361 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 CHEK2P3-201ENST00000416118 248 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 NCOR1P3-201ENST00000420479 303 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 AF228730.4-201ENST00000421457 183 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXA3O43365 IGHV5-78-201ENST00000450948 295 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 EIF4A1P11-201ENST00000451239 222 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 AZGP1P2-201ENST00000454506 345 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 Z92846.1-201ENST00000456203 268 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA3O43365 RPS29P15-201ENST00000458329 171 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 MRPS17P3-201ENST00000465453 385 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.28□□□□□ -1.72
HOXA3O43365 BX284632.1-201ENST00000478218 541 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA3O43365 RPS17P5-201ENST00000498293 408 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.28□□□□□ -1.72
HOXA3O43365 TTC39CP1-201ENST00000512513 755 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 RN7SKP82-201ENST00000516786 223 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 RN7SKP256-201ENST00000517201 314 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 AP005435.4-201ENST00000529514 284 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 OR5D15P-201ENST00000531671 942 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXA3O43365 SETP7-201ENST00000552169 453 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 SCOCP1-201ENST00000554676 349 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 MTCO3P13-201ENST00000577757 781 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXA3O43365 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXA3O43365 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA3O43365 AC022432.1-201ENST00000595739 310 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 AP000769.2-201ENST00000602344 396 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 AC021646.1-201ENST00000605469 484 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.28□□□□□ -1.72
HOXA3O43365 Y_RNA.812-201ENST00000610788 101 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA3O43365 Y_RNA.784-201ENST00000613803 101 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 Y_RNA.787-201ENST00000616522 101 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 Y_RNA.780-201ENST00000617336 101 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 Y_RNA.801-201ENST00000619005 101 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 AP000843.1-201ENST00000624880 701 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA3O43365 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.28□□□□□ -1.72
HOXA3O43365 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
HOXA3O43365 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
HOXA3O43365 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXA3O43365 SAGE2P-201ENST00000420011 2126 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 AL645937.1-201ENST00000641739 1652 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 AC008079.2-201ENST00000623543 20396 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 AL451142.2-201ENST00000429076 2090 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC4.28□□□□□ -1.73
HOXA3O43365 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.28□□□□□ -1.73
HOXA3O43365 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
HOXA3O43365 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXA3O43365 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA3O43365 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA3O43365 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA3O43365 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA3O43365 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXA3O43365 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
HOXA3O43365 RNU6-641P-201ENST00000384006 107 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 MIR600-201ENST00000385007 98 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 MIR514A2-201ENST00000385131 88 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 MIR514A3-201ENST00000385132 88 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 MT-TC-201ENST00000387405 66 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AL356967.1-201ENST00000406305 431 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 RNU4-26P-201ENST00000410270 107 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 RAB28P1-201ENST00000411517 641 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 CYCSP10-201ENST00000417973 294 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 USP9YP20-201ENST00000419224 558 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 MTCO2P12-201ENST00000427426 682 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms