Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 NIFKP6-201ENST00000598115 845 ntBASIC4.09□□□□□ -1.75
LIMA1Q9UHB6 AL353778.1-201ENST00000603149 408 ntBASIC4.09□□□□□ -1.75
LIMA1Q9UHB6 MIR6500-201ENST00000622700 86 ntBASIC4.09□□□□□ -1.75
LIMA1Q9UHB6 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
LIMA1Q9UHB6 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
LIMA1Q9UHB6 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.09□□□□□ -1.75
LIMA1Q9UHB6 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.09□□□□□ -1.75
LIMA1Q9UHB6 AC097655.1-201ENST00000635075 318 ntBASIC4.09□□□□□ -1.75
LIMA1Q9UHB6 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.09□□□□□ -1.75
LIMA1Q9UHB6 ZNF542P-204ENST00000482727 1305 ntBASIC4.09□□□□□ -1.75
LIMA1Q9UHB6 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
LIMA1Q9UHB6 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
LIMA1Q9UHB6 SGO1P2-201ENST00000429458 1589 ntBASIC4.09□□□□□ -1.75
LIMA1Q9UHB6 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.76
LIMA1Q9UHB6 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.09□□□□□ -1.76
LIMA1Q9UHB6 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 RPL23AP57-201ENST00000332361 466 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 SNORA11B-201ENST00000408175 129 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 HMGB3P20-201ENST00000417997 600 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AC244098.2-201ENST00000422068 99 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 FAR2P4-202ENST00000425399 584 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 ARPC3P5-201ENST00000448802 534 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 MTND1P31-201ENST00000449206 961 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AC005297.2-201ENST00000450430 606 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 MTCO2P6-201ENST00000463134 685 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AC068587.2-201ENST00000478386 781 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 RPS3AP50-201ENST00000487064 803 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 RPL5P23-201ENST00000496040 868 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 FTH1P21-201ENST00000512179 511 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 RNU6-27P-201ENST00000516146 107 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 RNU6-150P-201ENST00000516237 95 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 RNU6-352P-201ENST00000516908 107 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 MTATP6P15-201ENST00000527233 835 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 RFPL1S-203ENST00000539579 330 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 UBE2NP1-201ENST00000545592 458 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AC006539.2-201ENST00000601729 572 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 ELOCP35-201ENST00000604289 336 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AC073073.2-201ENST00000609827 2578 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AC004009.2-201ENST00000623016 728 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AC004943.3-201ENST00000624116 600 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 AC103706.2-201ENST00000638080 240 ntBASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIMA1Q9UHB6 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 DDX43P2-201ENST00000604753 1354 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AL121657.1-201ENST00000327215 531 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 RNA5SP42-201ENST00000364278 115 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 RNU2-15P-201ENST00000410692 191 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 PIGPP2-201ENST00000411569 458 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 RAP1BP1-201ENST00000412709 553 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AL513174.1-201ENST00000423182 629 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AC093698.1-201ENST00000423843 571 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AL022400.1-201ENST00000423946 935 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 TXNL1P1-201ENST00000429528 554 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 BMS1P19-201ENST00000433925 393 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 MTCYBP31-201ENST00000438855 1122 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 SUMO2P2-201ENST00000456482 255 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 HMGB3P30-201ENST00000457863 606 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 UBDP1-202ENST00000457888 382 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 RPS7P7-201ENST00000463499 571 ntBASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LIMA1Q9UHB6 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms