Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC109446.4-201ENST00000623235 2755 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AP005435.3-201ENST00000531260 3198 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC008758.3-201ENST00000507003 1829 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 RNU6-223P-201ENST00000362830 107 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 RNU6-692P-201ENST00000384496 107 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 RPL31P52-201ENST00000407532 367 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 RN7SKP32-201ENST00000410167 303 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 PDCL2P1-201ENST00000419302 352 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC012065.2-201ENST00000421295 375 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 RPEP3-201ENST00000425462 676 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC006548.1-201ENST00000427470 102 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AL590233.1-201ENST00000430017 456 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 TAAR7P-201ENST00000436141 242 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 BNIP3P2-201ENST00000441221 577 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 RPS27AP17-201ENST00000463344 455 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC117522.3-201ENST00000507974 584 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 PCBP2P3-201ENST00000509726 843 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC090572.1-201ENST00000519251 160 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AP000907.2-201ENST00000530827 353 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 RN7SL802P-201ENST00000577858 299 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC005498.1-201ENST00000592125 465 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC115621.1-201ENST00000604653 858 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AL355472.4-201ENST00000610233 626 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC022106.2-201ENST00000620114 757 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AL161637.1-201ENST00000622380 412 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC011944.2-201ENST00000624440 683 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 CR381572.1-201ENST00000625098 102 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC022893.2-201ENST00000564832 3296 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 A2MP1-204ENST00000566278 4130 ntBASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC87Q9NVE4 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 MTCO1P7-201ENST00000419523 1542 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 RNU6-1227P-201ENST00000383981 107 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 MIR23B-201ENST00000384832 97 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 RNA5SP397-201ENST00000391323 118 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 SSXP10-201ENST00000402595 565 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AL356432.1-201ENST00000405809 419 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AL354719.1-201ENST00000406535 843 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AC069218.2-201ENST00000411665 344 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 NCOR1P3-201ENST00000420479 303 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AF228730.4-201ENST00000421457 183 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AL645608.4-201ENST00000423619 154 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 RPL36AP53-201ENST00000432891 316 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 RPL7AP61-201ENST00000443410 636 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AC104073.1-201ENST00000451988 151 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 snoU13.8-201ENST00000458890 104 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AC109327.1-201ENST00000471666 403 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 NIPA2P2-201ENST00000496376 1083 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 TMEM248P1-201ENST00000510579 951 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 RNA5SP401-201ENST00000515920 127 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AC027369.5-201ENST00000533838 755 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AC011611.1-201ENST00000552179 197 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 OR4T1P-201ENST00000554933 911 ntBASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 SSX9-202ENST00000608568 580 ntTSL 4 BASIC6.17□□□□□ -1.42
CCDC87Q9NVE4 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms