Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.19□□□□□ -1.58
UBE3DQ7Z6J8 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.19□□□□□ -1.58
UBE3DQ7Z6J8 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
UBE3DQ7Z6J8 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.19□□□□□ -1.58
UBE3DQ7Z6J8 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
UBE3DQ7Z6J8 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
UBE3DQ7Z6J8 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.19□□□□□ -1.58
UBE3DQ7Z6J8 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
UBE3DQ7Z6J8 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.19□□□□□ -1.58
UBE3DQ7Z6J8 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.19□□□□□ -1.58
UBE3DQ7Z6J8 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.19□□□□□ -1.58
UBE3DQ7Z6J8 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
UBE3DQ7Z6J8 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.19□□□□□ -1.58
UBE3DQ7Z6J8 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 MFF-206ENST00000392059 1710 ntTSL 5 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 RPL32P3-201ENST00000359025 275 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 Y_RNA.135-201ENST00000363439 95 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 Y_RNA.148-201ENST00000363557 117 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 Y_RNA.149-201ENST00000363558 117 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 RN7SKP124-201ENST00000364730 341 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 RNU5E-6P-201ENST00000365574 115 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 RN7SKP81-201ENST00000365603 331 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 SNORA70.6-201ENST00000383934 134 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 SNORD56.6-201ENST00000384569 71 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AL049697.2-201ENST00000403708 294 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AL121834.1-202ENST00000404494 277 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 RN7SKP293-201ENST00000411389 296 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 POLHP1-201ENST00000411806 470 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AL354766.1-201ENST00000423396 542 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 SRSF1P1-201ENST00000424058 520 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 CALM2P2-201ENST00000428512 440 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AL389925.1-201ENST00000432257 728 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 NPM1P18-201ENST00000434232 732 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 PRPF38AP2-201ENST00000438179 851 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AL031584.1-201ENST00000447169 754 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 SETP20-201ENST00000457046 852 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AL162395.1-201ENST00000457882 422 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 UBA52P7-201ENST00000486088 380 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 RN7SL466P-201ENST00000497546 295 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 RPS27P27-201ENST00000498779 255 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 CCDC34P1-201ENST00000507441 517 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 MIR4680-201ENST00000580906 66 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AC113194.1-201ENST00000606037 500 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AL691477.1-201ENST00000624398 162 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AC119674.1-207ENST00000641355 633 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
UBE3DQ7Z6J8 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC116667.1-201ENST00000604855 2072 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC009229.4-201ENST00000623854 1947 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AL353796.1-201ENST00000561542 3241 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC010266.2-201ENST00000564741 3255 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 RNU6-960P-201ENST00000364056 120 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 RNA5SP242-201ENST00000364171 118 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 SNORD115-7-201ENST00000365306 82 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 RNU6-1318P-201ENST00000365389 103 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 DBIP1-201ENST00000401435 260 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 RPS12P24-201ENST00000412619 387 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 RPL6P29-201ENST00000414863 865 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 NUP35P1-201ENST00000422734 947 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 SKA2P1-201ENST00000425592 390 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 153.9 ms