Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AP001646.1-201ENST00000527936 915 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.1□□□□□ -2.07
USF3Q68DE3 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.1□□□□□ -2.07
USF3Q68DE3 AL358913.1-201ENST00000554342 121 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC2.1□□□□□ -2.07
USF3Q68DE3 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC2.1□□□□□ -2.07
USF3Q68DE3 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.1□□□□□ -2.07
USF3Q68DE3 AC010297.1-201ENST00000623948 149 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC2.1□□□□□ -2.07
USF3Q68DE3 U6.98-201ENST00000637157 84 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC2.1□□□□□ -2.07
USF3Q68DE3 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
USF3Q68DE3 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
USF3Q68DE3 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC2.1□□□□□ -2.07
USF3Q68DE3 SNORA3.2-201ENST00000408221 125 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 AL513175.2-201ENST00000422071 443 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.1□□□□□ -2.07
USF3Q68DE3 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.1□□□□□ -2.07
USF3Q68DE3 SEPT7P6-201ENST00000469999 1143 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.1□□□□□ -2.07
USF3Q68DE3 AC128657.1-201ENST00000549459 145 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 MIR3670-2-201ENST00000582974 65 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 MIR3670-1-201ENST00000584160 65 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 MIR3670-3-201ENST00000584855 65 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 AC078899.3-201ENST00000599065 212 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 RNU6-84P-201ENST00000607737 102 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 MIR3670-4-201ENST00000612260 65 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 AC006020.1-201ENST00000420179 1854 ntBASIC2.1□□□□□ -2.07
USF3Q68DE3 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.09□□□□□ -2.07
USF3Q68DE3 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
USF3Q68DE3 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
USF3Q68DE3 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.09□□□□□ -2.07
USF3Q68DE3 SNORA41-201ENST00000384675 132 ntBASIC2.09□□□□□ -2.07
USF3Q68DE3 ARF4P2-201ENST00000430209 526 ntBASIC2.09□□□□□ -2.07
USF3Q68DE3 AC018634.1-201ENST00000437554 401 ntBASIC2.09□□□□□ -2.07
USF3Q68DE3 HMGN1P5-201ENST00000448591 263 ntBASIC2.09□□□□□ -2.07
USF3Q68DE3 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC2.09□□□□□ -2.07
USF3Q68DE3 RN7SKP24-201ENST00000515888 284 ntBASIC2.09□□□□□ -2.07
USF3Q68DE3 AC009063.1-201ENST00000563342 702 ntBASIC2.09□□□□□ -2.07
USF3Q68DE3 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC2.09□□□□□ -2.07
USF3Q68DE3 AL354950.1-201ENST00000614150 568 ntBASIC2.09□□□□□ -2.07
USF3Q68DE3 AC073348.1-201ENST00000623002 331 ntBASIC2.09□□□□□ -2.07
USF3Q68DE3 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USF3Q68DE3 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USF3Q68DE3 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.09□□□□□ -2.07
USF3Q68DE3 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.07
USF3Q68DE3 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.07
USF3Q68DE3 AP000526.1-201ENST00000603308 1388 ntBASIC2.09□□□□□ -2.08
USF3Q68DE3 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
USF3Q68DE3 SNORA26.7-201ENST00000391288 122 ntBASIC2.09□□□□□ -2.08
USF3Q68DE3 ATF1P1-201ENST00000406040 927 ntBASIC2.09□□□□□ -2.08
USF3Q68DE3 AL590103.1-201ENST00000434488 307 ntBASIC2.09□□□□□ -2.08
USF3Q68DE3 AC011816.1-201ENST00000441346 546 ntBASIC2.09□□□□□ -2.08
USF3Q68DE3 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC2.09□□□□□ -2.08
USF3Q68DE3 AC133134.1-201ENST00000466800 359 ntBASIC2.09□□□□□ -2.08
USF3Q68DE3 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.09□□□□□ -2.08
USF3Q68DE3 IGKV2-36-201ENST00000519999 223 ntBASIC2.09□□□□□ -2.08
USF3Q68DE3 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC2.09□□□□□ -2.08
USF3Q68DE3 AP001317.1-201ENST00000531194 960 ntBASIC2.09□□□□□ -2.08
USF3Q68DE3 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.09□□□□□ -2.08
USF3Q68DE3 MIR1273D-201ENST00000577266 86 ntBASIC2.09□□□□□ -2.08
USF3Q68DE3 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.09□□□□□ -2.08
USF3Q68DE3 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.09□□□□□ -2.08
USF3Q68DE3 MIR6715B-201ENST00000637172 77 ntBASIC2.09□□□□□ -2.08
USF3Q68DE3 AC069528.2-201ENST00000624849 1991 ntBASIC2.08□□□□□ -2.08
USF3Q68DE3 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
USF3Q68DE3 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
USF3Q68DE3 AC104454.1-201ENST00000421341 1401 ntBASIC2.08□□□□□ -2.08
USF3Q68DE3 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
USF3Q68DE3 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.08□□□□□ -2.08
USF3Q68DE3 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC2.08□□□□□ -2.08
USF3Q68DE3 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.08□□□□□ -2.08
USF3Q68DE3 BTF3P7-201ENST00000407097 488 ntBASIC2.08□□□□□ -2.08
USF3Q68DE3 RNA5SP239-201ENST00000410218 129 ntBASIC2.08□□□□□ -2.08
USF3Q68DE3 MTATP6P11-201ENST00000428071 670 ntBASIC2.08□□□□□ -2.08
USF3Q68DE3 AC092013.1-201ENST00000438795 332 ntBASIC2.08□□□□□ -2.08
USF3Q68DE3 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC2.08□□□□□ -2.08
USF3Q68DE3 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.08□□□□□ -2.08
USF3Q68DE3 OR4G11P-201ENST00000492842 939 ntBASIC2.08□□□□□ -2.08
USF3Q68DE3 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.08□□□□□ -2.08
USF3Q68DE3 AC008126.1-201ENST00000549019 480 ntBASIC2.08□□□□□ -2.08
USF3Q68DE3 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
USF3Q68DE3 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.08□□□□□ -2.08
USF3Q68DE3 AC007423.1-201ENST00000605009 627 ntBASIC2.08□□□□□ -2.08
USF3Q68DE3 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.08□□□□□ -2.08
USF3Q68DE3 SNORA50A-202ENST00000629536 136 ntBASIC2.08□□□□□ -2.08
USF3Q68DE3 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.08□□□□□ -2.08
USF3Q68DE3 MTND5P12-201ENST00000502851 1449 ntBASIC2.08□□□□□ -2.08
USF3Q68DE3 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC2.08□□□□□ -2.08
USF3Q68DE3 OR5AQ1P-202ENST00000641257 1534 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 RNU6-253P-201ENST00000384730 105 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
USF3Q68DE3 AC104389.3-201ENST00000445629 235 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 RPL21P99-201ENST00000480369 423 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 AC108471.1-201ENST00000513977 287 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.07□□□□□ -2.08
USF3Q68DE3 AC068313.1-201ENST00000604028 1008 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
USF3Q68DE3 AC009501.3-201ENST00000605001 1352 ntBASIC2.07□□□□□ -2.08
USF3Q68DE3 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms