Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 SPRR2C-201ENST00000290702 219 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 RNA5SP479-201ENST00000364858 117 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 Y_RNA.302-201ENST00000364997 102 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 SNORA70E-201ENST00000384492 135 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AL078595.1-201ENST00000404458 226 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 RPL21P65-201ENST00000406094 466 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 RNU4-6P-201ENST00000410804 122 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 CDK8P2-201ENST00000415020 547 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AC108032.1-201ENST00000416706 207 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 RPS12P23-201ENST00000419579 400 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 CYCSP46-201ENST00000423569 204 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 OR4F13P-201ENST00000428478 931 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 BX276092.4-201ENST00000452056 248 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 OR6C5P-201ENST00000452388 923 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 RPL5P32-201ENST00000454085 879 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 MTCYBP1-201ENST00000454315 1119 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 RPL38P1-201ENST00000460914 211 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AC087879.1-201ENST00000474343 374 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AC087385.1-201ENST00000475062 312 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 RN7SKP277-201ENST00000516895 283 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AL512347.1-201ENST00000566420 503 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AC012414.6-201ENST00000568241 401 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AC025627.2-201ENST00000576220 160 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AC018755.4-201ENST00000619715 454 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 AC092650.2-201ENST00000619984 902 ntBASIC4.84□□□□□ -1.63
VPS53Q5VIR6 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.64
VPS53Q5VIR6 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.84□□□□□ -1.64
VPS53Q5VIR6 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 SAGE4P-201ENST00000442271 3381 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC093536.2-201ENST00000565257 1406 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 RNU6-115P-201ENST00000364310 107 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 RNA5SP283-201ENST00000365604 119 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 MIR153-1-201ENST00000384914 90 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 USP9YP33-201ENST00000412220 421 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 MTCYBP38-201ENST00000417160 1123 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC092634.6-201ENST00000418558 192 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AL117339.2-201ENST00000430475 180 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 RPL36P19-201ENST00000430744 301 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 USP9YP35-201ENST00000435696 412 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC241584.1-201ENST00000438469 1241 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AL451050.1-201ENST00000450126 415 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 HMGB3P22-202ENST00000451823 572 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 SUMO2P2-201ENST00000456482 255 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 RN7SL271P-201ENST00000487601 295 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 RPL29P14-201ENST00000495837 428 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC109458.1-201ENST00000508858 316 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 SLC2A13P1-201ENST00000531560 322 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC007224.1-201ENST00000564410 144 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC022968.1-201ENST00000567372 442 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 EIF1P4-201ENST00000572664 335 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC087683.1-201ENST00000591187 441 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 LLPHP1-201ENST00000603571 367 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AL451044.1-201ENST00000604867 238 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC069304.2-201ENST00000605154 435 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 RNU4-89P-201ENST00000607443 133 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms