Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC008083.4-201ENST00000615076 444 ntBASIC4.11□□□□□ -1.75
USP41Q3LFD5 AL136981.2-201ENST00000617319 734 ntBASIC4.11□□□□□ -1.75
USP41Q3LFD5 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
USP41Q3LFD5 AC004943.3-201ENST00000624116 600 ntBASIC4.11□□□□□ -1.75
USP41Q3LFD5 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.11□□□□□ -1.75
USP41Q3LFD5 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.11□□□□□ -1.75
USP41Q3LFD5 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
USP41Q3LFD5 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.11□□□□□ -1.75
USP41Q3LFD5 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.11□□□□□ -1.75
USP41Q3LFD5 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
USP41Q3LFD5 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
USP41Q3LFD5 MTCO1P14-201ENST00000441695 1559 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
USP41Q3LFD5 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
USP41Q3LFD5 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
USP41Q3LFD5 OR5H2-201ENST00000355273 945 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 MIR208A-201ENST00000362287 71 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 SNORA63.1-201ENST00000362493 131 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 MIR199A2-201ENST00000385289 110 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 RPL23AP29-201ENST00000397284 453 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
USP41Q3LFD5 AL035423.1-201ENST00000420331 213 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 OR51AB1P-201ENST00000429046 620 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 Z74696.2-201ENST00000436514 498 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
USP41Q3LFD5 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 RPL39P6-201ENST00000448289 150 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 PDSS1P2-201ENST00000449397 678 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC104073.1-201ENST00000451988 151 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 AL136126.1-201ENST00000473603 402 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 DUXAP2-201ENST00000519198 589 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC022695.1-201ENST00000522089 237 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 CCNG2P1-201ENST00000549521 1000 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC002400.1-201ENST00000569310 726 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC007566.2-201ENST00000603642 413 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AP003117.2-201ENST00000606010 545 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 VIS1.1-201ENST00000610517 203 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC019176.2-201ENST00000611579 315 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 MIR486-1-201ENST00000612171 68 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC243773.3-201ENST00000613270 256 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AL391261.4-201ENST00000616012 481 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AL591424.2-201ENST00000617023 128 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC231657.1-201ENST00000624313 397 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.1□□□□□ -1.75
USP41Q3LFD5 AL773545.4-201ENST00000637262 310 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 AL513478.4-201ENST00000641636 310 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
USP41Q3LFD5 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
USP41Q3LFD5 AC011978.2-201ENST00000569835 2054 ntBASIC4.1□□□□□ -1.75
USP41Q3LFD5 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
USP41Q3LFD5 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
USP41Q3LFD5 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USP41Q3LFD5 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP41Q3LFD5 ZNF33CP-201ENST00000432492 2030 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP41Q3LFD5 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USP41Q3LFD5 SNORA51.6-201ENST00000384151 125 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 MIR3074-201ENST00000384885 81 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 MIR23A-201ENST00000385245 73 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USP41Q3LFD5 RN7SKP56-201ENST00000410513 331 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 RNU4-72P-201ENST00000410754 173 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP41Q3LFD5 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 AC093578.1-201ENST00000415219 368 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 SYF2P2-201ENST00000417620 583 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 MTND4P20-201ENST00000424125 869 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 PSMA2P3-201ENST00000429685 675 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 UBE2D3P1-201ENST00000436669 444 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 RPL23AP35-201ENST00000451906 501 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 AC106872.2-201ENST00000494303 480 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 AC104685.1-201ENST00000502445 371 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 XKRY-201ENST00000510392 1100 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 AC092470.1-201ENST00000546187 132 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms