Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 CR381572.1-201ENST00000625098 102 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 AC006065.6-201ENST00000625201 545 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA4Q00056 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA4Q00056 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA4Q00056 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA4Q00056 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA4Q00056 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA4Q00056 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXA4Q00056 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA4Q00056 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA4Q00056 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXA4Q00056 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA4Q00056 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA4Q00056 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA4Q00056 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 LINC00622-201ENST00000562811 1570 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA4Q00056 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA4Q00056 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA4Q00056 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA4Q00056 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
HOXA4Q00056 Y_RNA.61-201ENST00000362835 102 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 RNU1-39P-201ENST00000383897 165 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 Y_RNA.481-201ENST00000384373 102 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 MIR585-201ENST00000384887 94 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA4Q00056 AL049693.1-201ENST00000402760 611 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AL356776.1-201ENST00000406574 447 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 RNA5SP113-201ENST00000410486 84 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC127526.1-201ENST00000417526 366 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA4Q00056 RPL21P111-201ENST00000418453 477 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 RPS15AP40-201ENST00000419621 391 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC012498.1-201ENST00000424037 437 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA4Q00056 GTF2IP20-201ENST00000431663 360 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA4Q00056 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA4Q00056 AL356276.2-201ENST00000435919 558 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 RPS15AP9-201ENST00000439856 381 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA4Q00056 SLC25A18P1-201ENST00000449385 454 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 FDX1P2-201ENST00000450769 375 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC079168.2-201ENST00000453977 416 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC092324.1-201ENST00000468671 324 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 RPL12P20-201ENST00000475538 479 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC055855.1-201ENST00000489563 579 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC079382.1-201ENST00000493346 557 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 HMGN1P12-201ENST00000499125 195 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA4Q00056 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXA4Q00056 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.02□□□□□ -1.77
HOXA4Q00056 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA4Q00056 AC114786.4-201ENST00000508771 728 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 MTCO1P35-201ENST00000515270 228 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 RN7SKP276-201ENST00000516242 268 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC022616.3-201ENST00000523940 148 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXA4Q00056 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA4Q00056 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC4.02□□□□□ -1.77
HOXA4Q00056 AP000907.2-201ENST00000530827 353 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA4Q00056 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.02□□□□□ -1.77
HOXA4Q00056 AC034105.3-201ENST00000565294 442 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC090615.1-201ENST00000577519 154 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC060771.1-201ENST00000582031 164 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA4Q00056 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA4Q00056 UBE2V2P2-201ENST00000587677 504 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXA4Q00056 YWHAQP7-201ENST00000603536 658 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC025449.1-201ENST00000603896 529 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC112230.1-201ENST00000604342 547 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AC007621.1-201ENST00000604544 437 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA4Q00056 AL596245.1-201ENST00000618994 362 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 AL356585.4-201ENST00000623078 1229 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA4Q00056 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA4Q00056 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA4Q00056 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA4Q00056 AL442639.1-201ENST00000625030 1899 ntBASIC4.02□□□□□ -1.77
HOXA4Q00056 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
HOXA4Q00056 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA4Q00056 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA4Q00056 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA4Q00056 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA4Q00056 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA4Q00056 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA4Q00056 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXA4Q00056 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA4Q00056 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA4Q00056 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA4Q00056 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
HOXA4Q00056 RNA5SP258-201ENST00000362750 119 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 RNU6-97P-201ENST00000363387 104 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 RNU1-130P-201ENST00000363930 160 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 RN7SKP235-201ENST00000410662 305 ntBASIC4.01□□□□□ -1.77
HOXA4Q00056 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms