Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AP000619.3-201ENST00000535634 1127 ntBASIC3.1□□□□□ -1.91
RFX3P48380 NIFKP8-201ENST00000560500 874 ntBASIC3.1□□□□□ -1.91
RFX3P48380 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.1□□□□□ -1.91
RFX3P48380 MTND4LP25-201ENST00000570218 163 ntBASIC3.1□□□□□ -1.91
RFX3P48380 BPTFP1-201ENST00000579209 492 ntBASIC3.1□□□□□ -1.91
RFX3P48380 RN7SL339P-201ENST00000580597 296 ntBASIC3.1□□□□□ -1.91
RFX3P48380 SNORD39.3-201ENST00000584451 71 ntBASIC3.1□□□□□ -1.91
RFX3P48380 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.1□□□□□ -1.91
RFX3P48380 AL355365.1-201ENST00000616480 294 ntBASIC3.1□□□□□ -1.91
RFX3P48380 AC068722.2-201ENST00000618734 544 ntBASIC3.1□□□□□ -1.91
RFX3P48380 AC093875.1-201ENST00000623688 504 ntBASIC3.1□□□□□ -1.91
RFX3P48380 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.1□□□□□ -1.91
RFX3P48380 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.1□□□□□ -1.91
RFX3P48380 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
RFX3P48380 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
RFX3P48380 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
RFX3P48380 AL645568.2-201ENST00000432815 1337 ntBASIC3.1□□□□□ -1.91
RFX3P48380 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.1□□□□□ -1.91
RFX3P48380 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.1□□□□□ -1.91
RFX3P48380 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
RFX3P48380 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.09□□□□□ -1.91
RFX3P48380 RNA5SP72-201ENST00000364442 117 ntBASIC3.09□□□□□ -1.91
RFX3P48380 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
RFX3P48380 RNU6-730P-201ENST00000383954 104 ntBASIC3.09□□□□□ -1.91
RFX3P48380 MIR23A-201ENST00000385245 73 ntBASIC3.09□□□□□ -1.91
RFX3P48380 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
RFX3P48380 SNORA48.8-201ENST00000391324 134 ntBASIC3.09□□□□□ -1.91
RFX3P48380 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
RFX3P48380 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
RFX3P48380 RPS7P15-201ENST00000415804 584 ntBASIC3.09□□□□□ -1.91
RFX3P48380 RPF2P1-201ENST00000424137 906 ntBASIC3.09□□□□□ -1.91
RFX3P48380 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.09□□□□□ -1.91
RFX3P48380 AL035410.1-201ENST00000427409 427 ntBASIC3.09□□□□□ -1.91
RFX3P48380 ISCA1P2-201ENST00000438679 421 ntBASIC3.09□□□□□ -1.91
RFX3P48380 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.09□□□□□ -1.91
RFX3P48380 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.09□□□□□ -1.91
RFX3P48380 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.09□□□□□ -1.91
RFX3P48380 PRSS3P4-201ENST00000453323 162 ntBASIC3.09□□□□□ -1.91
RFX3P48380 RBMY2UP-201ENST00000453474 324 ntBASIC3.09□□□□□ -1.91
RFX3P48380 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.09□□□□□ -1.91
RFX3P48380 AC007967.1-201ENST00000455422 1159 ntBASIC3.09□□□□□ -1.91
RFX3P48380 ARPC3P2-201ENST00000457786 533 ntBASIC3.09□□□□□ -1.91
RFX3P48380 AP002884.2-201ENST00000471647 395 ntBASIC3.09□□□□□ -1.91
RFX3P48380 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.09□□□□□ -1.91
RFX3P48380 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.09□□□□□ -1.91
RFX3P48380 AC113192.3-201ENST00000529152 742 ntBASIC3.09□□□□□ -1.91
RFX3P48380 AL121603.1-201ENST00000553815 142 ntBASIC3.09□□□□□ -1.91
RFX3P48380 AL163153.1-201ENST00000554223 283 ntBASIC3.09□□□□□ -1.91
RFX3P48380 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.09□□□□□ -1.91
RFX3P48380 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.09□□□□□ -1.91
RFX3P48380 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.09□□□□□ -1.91
RFX3P48380 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC3.09□□□□□ -1.91
RFX3P48380 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.09□□□□□ -1.91
RFX3P48380 AL365400.2-201ENST00000605604 902 ntBASIC3.09□□□□□ -1.91
RFX3P48380 AC026741.1-201ENST00000605892 482 ntBASIC3.09□□□□□ -1.91
RFX3P48380 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.09□□□□□ -1.91
RFX3P48380 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.09□□□□□ -1.91
RFX3P48380 AC073968.1-201ENST00000618594 637 ntBASIC3.09□□□□□ -1.91
RFX3P48380 AC012314.7-201ENST00000619693 93 ntBASIC3.09□□□□□ -1.91
RFX3P48380 AC015967.1-201ENST00000619893 476 ntBASIC3.09□□□□□ -1.91
RFX3P48380 AC244100.1-202ENST00000621554 382 ntBASIC3.09□□□□□ -1.91
RFX3P48380 MTND2P41-201ENST00000637599 773 ntBASIC3.09□□□□□ -1.91
RFX3P48380 AC004925.1-201ENST00000624256 2706 ntBASIC3.09□□□□□ -1.92
RFX3P48380 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.09□□□□□ -1.92
RFX3P48380 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.09□□□□□ -1.92
RFX3P48380 AL049781.1-201ENST00000623195 3585 ntBASIC3.08□□□□□ -1.92
RFX3P48380 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.08□□□□□ -1.92
RFX3P48380 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.08□□□□□ -1.92
RFX3P48380 AC017071.1-201ENST00000564407 2204 ntBASIC3.08□□□□□ -1.92
RFX3P48380 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
RFX3P48380 MTND5P27-201ENST00000428871 1720 ntBASIC3.08□□□□□ -1.92
RFX3P48380 AC116096.1-201ENST00000566804 2314 ntBASIC3.08□□□□□ -1.92
RFX3P48380 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
RFX3P48380 AC130650.2-201ENST00000618736 2403 ntBASIC3.08□□□□□ -1.92
RFX3P48380 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
RFX3P48380 MIR148B-201ENST00000362252 99 ntBASIC3.08□□□□□ -1.92
RFX3P48380 SNORD56.3-201ENST00000363507 71 ntBASIC3.08□□□□□ -1.92
RFX3P48380 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.08□□□□□ -1.92
RFX3P48380 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
RFX3P48380 RNU6-932P-201ENST00000391108 106 ntBASIC3.08□□□□□ -1.92
RFX3P48380 RPL31P1-201ENST00000398116 372 ntBASIC3.08□□□□□ -1.92
RFX3P48380 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
RFX3P48380 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.08□□□□□ -1.92
RFX3P48380 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC3.08□□□□□ -1.92
RFX3P48380 KRR1P1-201ENST00000419430 803 ntBASIC3.08□□□□□ -1.92
RFX3P48380 YPEL5P1-201ENST00000419731 367 ntBASIC3.08□□□□□ -1.92
RFX3P48380 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.08□□□□□ -1.92
RFX3P48380 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.08□□□□□ -1.92
RFX3P48380 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.08□□□□□ -1.92
RFX3P48380 FTH1P1-201ENST00000437933 532 ntBASIC3.08□□□□□ -1.92
RFX3P48380 HIGD1AP11-201ENST00000438361 280 ntBASIC3.08□□□□□ -1.92
RFX3P48380 AC127537.2-201ENST00000439258 465 ntBASIC3.08□□□□□ -1.92
RFX3P48380 AL158053.1-201ENST00000441503 453 ntBASIC3.08□□□□□ -1.92
RFX3P48380 AC017099.1-201ENST00000448261 1028 ntBASIC3.08□□□□□ -1.92
RFX3P48380 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.08□□□□□ -1.92
RFX3P48380 CDC42P1-201ENST00000456658 548 ntBASIC3.08□□□□□ -1.92
RFX3P48380 AC010301.1-201ENST00000473936 355 ntBASIC3.08□□□□□ -1.92
RFX3P48380 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
RFX3P48380 MTCYBP37-201ENST00000510642 1133 ntBASIC3.08□□□□□ -1.92
RFX3P48380 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms