Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.19□□□□□ -1.9
COL18A1P39060 AP001317.1-201ENST00000531194 960 ntBASIC3.19□□□□□ -1.9
COL18A1P39060 AC044913.1-201ENST00000557200 430 ntBASIC3.19□□□□□ -1.9
COL18A1P39060 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC3.19□□□□□ -1.9
COL18A1P39060 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.19□□□□□ -1.9
COL18A1P39060 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.19□□□□□ -1.9
COL18A1P39060 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL18A1P39060 AL137246.1-201ENST00000607072 977 ntBASIC3.19□□□□□ -1.9
COL18A1P39060 AL021368.2-201ENST00000606125 5352 ntBASIC3.19□□□□□ -1.9
COL18A1P39060 AC091564.4-201ENST00000533934 2194 ntBASIC3.19□□□□□ -1.9
COL18A1P39060 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
COL18A1P39060 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL18A1P39060 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.18□□□□□ -1.9
COL18A1P39060 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL18A1P39060 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.18□□□□□ -1.9
COL18A1P39060 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.18□□□□□ -1.9
COL18A1P39060 EIF5P1-201ENST00000400019 1231 ntBASIC3.18□□□□□ -1.9
COL18A1P39060 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.18□□□□□ -1.9
COL18A1P39060 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.18□□□□□ -1.9
COL18A1P39060 CLIC4P1-201ENST00000453177 535 ntBASIC3.18□□□□□ -1.9
COL18A1P39060 BLNK-209ENST00000495266 440 ntTSL 5 BASIC3.18□□□□□ -1.9
COL18A1P39060 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.18□□□□□ -1.9
COL18A1P39060 RNU6-319P-201ENST00000516025 108 ntBASIC3.18□□□□□ -1.9
COL18A1P39060 HMGB3P26-201ENST00000560051 582 ntBASIC3.18□□□□□ -1.9
COL18A1P39060 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.18□□□□□ -1.9
COL18A1P39060 NF1P10-201ENST00000613227 742 ntBASIC3.18□□□□□ -1.9
COL18A1P39060 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
COL18A1P39060 MIR1291-201ENST00000627649 87 ntBASIC3.18□□□□□ -1.9
COL18A1P39060 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
COL18A1P39060 CNOT6LP1-201ENST00000559681 1462 ntBASIC3.18□□□□□ -1.9
COL18A1P39060 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.18□□□□□ -1.9
COL18A1P39060 ATG3P1-201ENST00000419507 911 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.17□□□□□ -1.9
COL18A1P39060 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
COL18A1P39060 CCNHP1-201ENST00000513311 678 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.17□□□□□ -1.9
COL18A1P39060 AC021269.2-201ENST00000532318 330 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 OR8X1P-201ENST00000534542 869 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.17□□□□□ -1.9
COL18A1P39060 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.17□□□□□ -1.9
COL18A1P39060 AC019131.2-201ENST00000609071 870 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 AC009318.2-201ENST00000610917 651 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 MIR7111-201ENST00000619751 72 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
COL18A1P39060 AC117529.2-201ENST00000512159 2068 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
COL18A1P39060 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
COL18A1P39060 AC104454.1-201ENST00000421341 1401 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 Y_RNA.4-201ENST00000362333 112 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC3.17□□□□□ -1.9
COL18A1P39060 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.17□□□□□ -1.9
COL18A1P39060 AC069277.2-201ENST00000454211 432 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 HMGN2P23-201ENST00000456759 269 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
COL18A1P39060 AP001207.1-201ENST00000524051 481 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.17□□□□□ -1.9
COL18A1P39060 AC061975.8-201ENST00000587058 721 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 AC012119.1-201ENST00000603184 222 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 GMCL1P2-201ENST00000605230 823 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 AC092184.1-201ENST00000625042 715 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 AC110792.3-201ENST00000595906 1614 ntBASIC3.17□□□□□ -1.9
COL18A1P39060 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
COL18A1P39060 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.17□□□□□ -1.9
COL18A1P39060 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.17□□□□□ -1.9
COL18A1P39060 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL18A1P39060 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL18A1P39060 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.16□□□□□ -1.9
COL18A1P39060 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL18A1P39060 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC3.16□□□□□ -1.9
COL18A1P39060 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC3.16□□□□□ -1.9
COL18A1P39060 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.16□□□□□ -1.9
COL18A1P39060 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
COL18A1P39060 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.16□□□□□ -1.9
COL18A1P39060 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.16□□□□□ -1.9
COL18A1P39060 AC116447.1-201ENST00000613153 453 ntBASIC3.16□□□□□ -1.9
COL18A1P39060 AC123768.4-201ENST00000616244 701 ntBASIC3.16□□□□□ -1.9
COL18A1P39060 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL18A1P39060 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
COL18A1P39060 RNU1-87P-201ENST00000363727 170 ntBASIC3.15□□□□□ -1.9
COL18A1P39060 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
COL18A1P39060 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.15□□□□□ -1.9
COL18A1P39060 AC099336.2-201ENST00000422457 254 ntBASIC3.15□□□□□ -1.9
COL18A1P39060 AL121578.1-201ENST00000428051 892 ntBASIC3.15□□□□□ -1.9
COL18A1P39060 AL354710.1-201ENST00000453641 246 ntBASIC3.15□□□□□ -1.9
COL18A1P39060 AC068587.2-201ENST00000478386 781 ntBASIC3.15□□□□□ -1.9
COL18A1P39060 AP000926.3-201ENST00000497201 299 ntBASIC3.15□□□□□ -1.9
COL18A1P39060 AC147055.1-201ENST00000509261 750 ntBASIC3.15□□□□□ -1.9
COL18A1P39060 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.15□□□□□ -1.9
COL18A1P39060 RANP3-201ENST00000530970 276 ntBASIC3.15□□□□□ -1.9
COL18A1P39060 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.15□□□□□ -1.9
COL18A1P39060 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC3.15□□□□□ -1.9
COL18A1P39060 LINC01355-201ENST00000566551 5444 ntBASIC3.15□□□□□ -1.9
COL18A1P39060 NEAT1-202ENST00000501122 22743 ntBASIC3.15□□□□□ -1.91
COL18A1P39060 AL158825.1-201ENST00000414735 521 ntBASIC3.15□□□□□ -1.91
COL18A1P39060 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.15□□□□□ -1.91
COL18A1P39060 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.15□□□□□ -1.91
COL18A1P39060 SEPT7P6-201ENST00000469999 1143 ntBASIC3.15□□□□□ -1.91
COL18A1P39060 CKS1BP2-201ENST00000497342 240 ntBASIC3.15□□□□□ -1.91
COL18A1P39060 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
COL18A1P39060 AC025857.1-201ENST00000525252 377 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms