Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
RORAP35398 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.21□□□□□ -1.9
RORAP35398 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.21□□□□□ -1.9
RORAP35398 HIGD1AP6-201ENST00000521833 279 ntBASIC3.21□□□□□ -1.9
RORAP35398 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.21□□□□□ -1.9
RORAP35398 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
RORAP35398 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.21□□□□□ -1.9
RORAP35398 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.21□□□□□ -1.9
RORAP35398 MIR4276-201ENST00000584832 70 ntBASIC3.21□□□□□ -1.9
RORAP35398 AL020997.3-201ENST00000602843 359 ntBASIC3.21□□□□□ -1.9
RORAP35398 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.21□□□□□ -1.9
RORAP35398 Z83843.1-201ENST00000604070 3685 ntBASIC3.21□□□□□ -1.9
RORAP35398 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.21□□□□□ -1.9
RORAP35398 AC025263.3-201ENST00000622965 1396 ntBASIC3.21□□□□□ -1.9
RORAP35398 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
RORAP35398 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
RORAP35398 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.21□□□□□ -1.9
RORAP35398 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
RORAP35398 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
RORAP35398 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
RORAP35398 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
RORAP35398 AC058791.1-201ENST00000608412 3198 ntBASIC3.2□□□□□ -1.9
RORAP35398 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
RORAP35398 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.2□□□□□ -1.9
RORAP35398 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.2□□□□□ -1.9
RORAP35398 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
RORAP35398 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
RORAP35398 SNORA38.1-201ENST00000364172 131 ntBASIC3.2□□□□□ -1.9
RORAP35398 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
RORAP35398 RNU6-629P-201ENST00000384061 103 ntBASIC3.2□□□□□ -1.9
RORAP35398 SKINT1L-201ENST00000401057 817 ntBASIC3.2□□□□□ -1.9
RORAP35398 RNU6-55P-201ENST00000411092 107 ntBASIC3.2□□□□□ -1.9
RORAP35398 RNU6-954P-201ENST00000411355 107 ntBASIC3.2□□□□□ -1.9
RORAP35398 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.2□□□□□ -1.9
RORAP35398 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
RORAP35398 AC091390.3-201ENST00000426478 338 ntBASIC3.2□□□□□ -1.9
RORAP35398 TRIAP1P1-201ENST00000427062 225 ntBASIC3.2□□□□□ -1.9
RORAP35398 FO393414.1-201ENST00000428697 1184 ntBASIC3.2□□□□□ -1.9
RORAP35398 AC010881.1-201ENST00000433830 235 ntBASIC3.2□□□□□ -1.9
RORAP35398 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.2□□□□□ -1.9
RORAP35398 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.2□□□□□ -1.9
RORAP35398 RPS24P6-201ENST00000452670 400 ntBASIC3.2□□□□□ -1.9
RORAP35398 AC104308.1-201ENST00000454621 333 ntBASIC3.2□□□□□ -1.9
RORAP35398 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.2□□□□□ -1.9
RORAP35398 AC010401.1-201ENST00000463867 348 ntBASIC3.2□□□□□ -1.9
RORAP35398 RN7SL442P-201ENST00000473804 320 ntBASIC3.2□□□□□ -1.9
RORAP35398 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.2□□□□□ -1.9
RORAP35398 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.2□□□□□ -1.9
RORAP35398 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC3.2□□□□□ -1.9
RORAP35398 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.2□□□□□ -1.9
RORAP35398 RNU6-711P-201ENST00000517255 106 ntBASIC3.2□□□□□ -1.9
RORAP35398 HMGB1P1-201ENST00000522557 636 ntBASIC3.2□□□□□ -1.9
RORAP35398 AC019227.1-201ENST00000526902 510 ntBASIC3.2□□□□□ -1.9
RORAP35398 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.2□□□□□ -1.9
RORAP35398 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
RORAP35398 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.2□□□□□ -1.9
RORAP35398 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.2□□□□□ -1.9
RORAP35398 AC011602.1-201ENST00000546484 331 ntBASIC3.2□□□□□ -1.9
RORAP35398 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.2□□□□□ -1.9
RORAP35398 CKS1BP3-201ENST00000600888 237 ntBASIC3.2□□□□□ -1.9
RORAP35398 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.2□□□□□ -1.9
RORAP35398 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.2□□□□□ -1.9
RORAP35398 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.2□□□□□ -1.9
RORAP35398 MIR8057-201ENST00000620957 69 ntBASIC3.2□□□□□ -1.9
RORAP35398 AP001002.2-201ENST00000625137 386 ntBASIC3.2□□□□□ -1.9
RORAP35398 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.2□□□□□ -1.9
RORAP35398 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
RORAP35398 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
RORAP35398 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.19□□□□□ -1.9
RORAP35398 AL513302.2-201ENST00000562313 1842 ntBASIC3.19□□□□□ -1.9
RORAP35398 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
RORAP35398 RNA5SP197-201ENST00000363357 119 ntBASIC3.19□□□□□ -1.9
RORAP35398 RNU6-444P-201ENST00000383988 108 ntBASIC3.19□□□□□ -1.9
RORAP35398 SAR1AP2-201ENST00000392696 594 ntBASIC3.19□□□□□ -1.9
RORAP35398 TAF9BP1-201ENST00000396646 746 ntBASIC3.19□□□□□ -1.9
RORAP35398 AC009237.2-201ENST00000421358 284 ntBASIC3.19□□□□□ -1.9
RORAP35398 HSFY1P1-201ENST00000423928 1178 ntBASIC3.19□□□□□ -1.9
RORAP35398 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.19□□□□□ -1.9
RORAP35398 DPPA2P1-201ENST00000428060 556 ntBASIC3.19□□□□□ -1.9
RORAP35398 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.19□□□□□ -1.9
RORAP35398 CYCSP32-201ENST00000440548 321 ntBASIC3.19□□□□□ -1.9
RORAP35398 AL096829.2-201ENST00000446582 742 ntBASIC3.19□□□□□ -1.9
RORAP35398 Z75741.1-201ENST00000446793 314 ntBASIC3.19□□□□□ -1.9
RORAP35398 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.19□□□□□ -1.9
RORAP35398 RPS4XP2-201ENST00000458402 793 ntBASIC3.19□□□□□ -1.9
RORAP35398 AC017015.1-201ENST00000477387 286 ntBASIC3.19□□□□□ -1.9
RORAP35398 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC3.19□□□□□ -1.9
RORAP35398 FCF1P3-201ENST00000496394 590 ntBASIC3.19□□□□□ -1.9
RORAP35398 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.19□□□□□ -1.9
RORAP35398 HMGB1P22-201ENST00000505315 124 ntBASIC3.19□□□□□ -1.9
RORAP35398 AC112198.1-201ENST00000505369 1220 ntBASIC3.19□□□□□ -1.9
RORAP35398 AC008628.1-201ENST00000508663 265 ntBASIC3.19□□□□□ -1.9
RORAP35398 PRELID3BP4-201ENST00000515476 571 ntBASIC3.19□□□□□ -1.9
RORAP35398 AC124293.1-201ENST00000530034 493 ntBASIC3.19□□□□□ -1.9
RORAP35398 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.19□□□□□ -1.9
RORAP35398 AP003385.6-201ENST00000531603 374 ntBASIC3.19□□□□□ -1.9
RORAP35398 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.19□□□□□ -1.9
RORAP35398 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.19□□□□□ -1.9
RORAP35398 AC011611.5-201ENST00000552477 578 ntBASIC3.19□□□□□ -1.9
RORAP35398 AC005476.1-201ENST00000554427 397 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms