Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MTND5P4-201ENST00000514978 288 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC5.14□□□□□ -1.59
HMGB1P09429 AC137768.1-201ENST00000549998 553 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC5.14□□□□□ -1.59
HMGB1P09429 MTCO3P24-201ENST00000572729 782 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.14□□□□□ -1.59
HMGB1P09429 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC5.14□□□□□ -1.59
HMGB1P09429 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC5.14□□□□□ -1.59
HMGB1P09429 AC113403.1-201ENST00000604910 193 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC5.14□□□□□ -1.59
HMGB1P09429 AL159972.1-201ENST00000625150 448 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HMGB1P09429 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC5.14□□□□□ -1.59
HMGB1P09429 AP000526.1-201ENST00000603308 1388 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC5.14□□□□□ -1.59
HMGB1P09429 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HMGB1P09429 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HMGB1P09429 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HMGB1P09429 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HMGB1P09429 RNA5SP332-201ENST00000391063 115 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HMGB1P09429 MIR1290-201ENST00000408735 78 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HMGB1P09429 MTCO1P17-201ENST00000411522 491 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC5.13□□□□□ -1.59
HMGB1P09429 RPS23P10-201ENST00000416185 486 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 MRPL50P2-201ENST00000416821 482 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC5.13□□□□□ -1.59
HMGB1P09429 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC5.13□□□□□ -1.59
HMGB1P09429 RPL7L1P10-201ENST00000427790 463 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 PRELID3BP10-201ENST00000431957 584 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 RPL23AP52-201ENST00000439311 478 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 AL590664.1-201ENST00000448065 339 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 RPL36AP33-201ENST00000450395 310 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC5.13□□□□□ -1.59
HMGB1P09429 MTND2P28-201ENST00000457540 1044 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 RPS3AP50-201ENST00000487064 803 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 AC147055.4-201ENST00000504399 745 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.13□□□□□ -1.59
HMGB1P09429 SNORA31.22-201ENST00000517204 135 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC5.13□□□□□ -1.59
HMGB1P09429 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC5.13□□□□□ -1.59
HMGB1P09429 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC5.13□□□□□ -1.59
HMGB1P09429 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC5.13□□□□□ -1.59
HMGB1P09429 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC5.13□□□□□ -1.59
HMGB1P09429 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC5.13□□□□□ -1.59
HMGB1P09429 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC5.13□□□□□ -1.59
HMGB1P09429 LINC02471-203ENST00000641941 4752 ntBASIC5.13□□□□□ -1.59
HMGB1P09429 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HMGB1P09429 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.13□□□□□ -1.59
HMGB1P09429 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC5.13□□□□□ -1.59
HMGB1P09429 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
HMGB1P09429 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
HMGB1P09429 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
HMGB1P09429 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC5.12□□□□□ -1.59
HMGB1P09429 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
HMGB1P09429 MIR331-201ENST00000362302 94 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 RNU6-723P-201ENST00000383973 107 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 SNORA1.3-201ENST00000384676 136 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 RNU6-1197P-201ENST00000391183 107 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 SNORD66.1-201ENST00000391230 76 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HMGB1P09429 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC5.12□□□□□ -1.59
HMGB1P09429 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC5.12□□□□□ -1.59
HMGB1P09429 PPP1R11P2-201ENST00000423543 382 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 USP9YP36-201ENST00000424581 829 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 AL512326.1-201ENST00000443050 721 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC5.12□□□□□ -1.59
HMGB1P09429 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.12□□□□□ -1.59
HMGB1P09429 UBDP1-202ENST00000457888 382 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC5.12□□□□□ -1.59
HMGB1P09429 RNU7-170P-201ENST00000459303 61 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 AC006499.6-201ENST00000511169 607 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
HMGB1P09429 AC110760.3-202ENST00000515177 371 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC5.12□□□□□ -1.59
HMGB1P09429 RNU6-840P-201ENST00000517275 65 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 IGLV3-26-201ENST00000520756 302 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC5.12□□□□□ -1.59
HMGB1P09429 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC5.12□□□□□ -1.59
HMGB1P09429 AC006064.5-201ENST00000541782 248 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 AL109766.1-201ENST00000555080 552 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC5.12□□□□□ -1.59
HMGB1P09429 AC141257.3-201ENST00000572906 215 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.12□□□□□ -1.59
HMGB1P09429 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC5.12□□□□□ -1.59
HMGB1P09429 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC5.12□□□□□ -1.59
HMGB1P09429 AC020914.6-201ENST00000594327 272 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 AC025588.2-201ENST00000604851 466 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 AC105148.1-201ENST00000604961 409 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC5.12□□□□□ -1.59
HMGB1P09429 AC140479.6-201ENST00000633535 357 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HMGB1P09429 Z98755.1-201ENST00000407015 1384 ntBASIC5.12□□□□□ -1.59
HMGB1P09429 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HMGB1P09429 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC5.12□□□□□ -1.59
HMGB1P09429 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC5.12□□□□□ -1.59
HMGB1P09429 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HMGB1P09429 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
HMGB1P09429 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms