Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC012314.7-201ENST00000619693 93 ntBASIC3.21□□□□□ -1.9
CLDN9O95484 AL392088.2-201ENST00000637607 285 ntBASIC3.21□□□□□ -1.9
CLDN9O95484 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.21□□□□□ -1.9
CLDN9O95484 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CLDN9O95484 AC130650.2-201ENST00000618736 2403 ntBASIC3.21□□□□□ -1.9
CLDN9O95484 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
CLDN9O95484 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.21□□□□□ -1.9
CLDN9O95484 ZNF542P-204ENST00000482727 1305 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLDN9O95484 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.2□□□□□ -1.9
CLDN9O95484 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLDN9O95484 AL353746.1-201ENST00000566293 6881 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CLDN9O95484 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CLDN9O95484 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLDN9O95484 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
CLDN9O95484 RNU6-207P-201ENST00000384137 107 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 RNU6-549P-201ENST00000384433 107 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 RPS29P4-201ENST00000414733 161 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 AC245291.1-201ENST00000419501 328 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.2□□□□□ -1.9
CLDN9O95484 AC000041.1-201ENST00000439655 175 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.2□□□□□ -1.9
CLDN9O95484 AC017099.1-201ENST00000448261 1028 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 AL034418.1-201ENST00000448675 860 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 RPL7P52-201ENST00000449200 742 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC3.2□□□□□ -1.9
CLDN9O95484 TRBV26-201ENST00000456572 344 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.2□□□□□ -1.9
CLDN9O95484 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CLDN9O95484 AC091860.1-201ENST00000505723 432 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 MTCYBP37-201ENST00000510642 1133 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 RNU6-885P-201ENST00000516607 104 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC3.2□□□□□ -1.9
CLDN9O95484 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.2□□□□□ -1.9
CLDN9O95484 AC104027.1-201ENST00000521887 300 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CLDN9O95484 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.2□□□□□ -1.9
CLDN9O95484 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.2□□□□□ -1.9
CLDN9O95484 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC3.2□□□□□ -1.9
CLDN9O95484 RPL21P12-201ENST00000559810 515 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.2□□□□□ -1.9
CLDN9O95484 AL845331.3-202ENST00000562856 261 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 MIR5186-201ENST00000577504 120 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.2□□□□□ -1.9
CLDN9O95484 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.2□□□□□ -1.9
CLDN9O95484 AC092184.1-201ENST00000625042 715 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLDN9O95484 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CLDN9O95484 AC111188.2-201ENST00000529697 1387 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.2□□□□□ -1.9
CLDN9O95484 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLDN9O95484 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CLDN9O95484 AC092326.2-201ENST00000624772 1561 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 AC005183.1-201ENST00000603687 1979 ntBASIC3.2□□□□□ -1.9
CLDN9O95484 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLDN9O95484 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.19□□□□□ -1.9
CLDN9O95484 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLDN9O95484 RNA5SP383-201ENST00000362934 120 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 RNU6-582P-201ENST00000362989 107 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 RNU6-1249P-201ENST00000363237 111 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
CLDN9O95484 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.19□□□□□ -1.9
CLDN9O95484 MIR449B-201ENST00000384995 97 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 MTND4LP20-201ENST00000402379 270 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 RAD23BP2-201ENST00000416003 1207 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 AC006548.1-201ENST00000427470 102 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 AC127537.2-201ENST00000439258 465 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.19□□□□□ -1.9
CLDN9O95484 AL592437.1-201ENST00000443781 492 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.19□□□□□ -1.9
CLDN9O95484 RPL26P28-201ENST00000451325 435 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 HMGB1P15-201ENST00000453854 435 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 SNORA59A-201ENST00000459326 152 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 PLGLA-201ENST00000465668 449 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 MTCO3P35-201ENST00000485582 781 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 AL024509.2-201ENST00000493462 493 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 AC108078.3-201ENST00000502633 489 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.19□□□□□ -1.9
CLDN9O95484 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.19□□□□□ -1.9
CLDN9O95484 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
CLDN9O95484 AC093331.1-201ENST00000521474 169 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 ZNF705CP-201ENST00000530515 889 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.19□□□□□ -1.9
CLDN9O95484 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.19□□□□□ -1.9
CLDN9O95484 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC3.19□□□□□ -1.9
CLDN9O95484 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.19□□□□□ -1.9
CLDN9O95484 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.19□□□□□ -1.9
CLDN9O95484 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.19□□□□□ -1.9
CLDN9O95484 AC012182.1-201ENST00000570133 895 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.19□□□□□ -1.9
CLDN9O95484 AF131215.7-201ENST00000602443 707 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 XIAPP1-201ENST00000603162 600 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 AL355812.1-201ENST00000603215 216 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 AL158211.2-201ENST00000607282 395 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC3.19□□□□□ -1.9
CLDN9O95484 AC093875.1-201ENST00000623688 504 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 CR381572.1-201ENST00000625098 102 ntBASIC3.19□□□□□ -1.9
CLDN9O95484 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.19□□□□□ -1.9
CLDN9O95484 MTND2P41-201ENST00000637599 773 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms