Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
HOXC11O43248 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC11O43248 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
HOXC11O43248 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HOXC11O43248 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.22□□□□□ -1.73
HOXC11O43248 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
HOXC11O43248 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC11O43248 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXC11O43248 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
HOXC11O43248 AL391994.1-201ENST00000254724 282 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 RPL21P132-201ENST00000331267 462 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 SNORA48.7-201ENST00000391302 135 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXC11O43248 AL049545.1-201ENST00000401856 572 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXC11O43248 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC11O43248 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC11O43248 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC11O43248 AC002381.1-201ENST00000447049 280 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 RPL36AP13-201ENST00000457490 317 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 RPL9P32-201ENST00000464118 620 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC11O43248 RPS3AP22-201ENST00000488297 769 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXC11O43248 SAP18P1-201ENST00000512058 390 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC11O43248 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXC11O43248 MTND5P4-201ENST00000514978 288 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 COX6CP8-201ENST00000522620 226 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 MTCO1P49-201ENST00000523429 802 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC11O43248 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXC11O43248 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXC11O43248 SETP7-201ENST00000552169 453 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXC11O43248 MIR5684-201ENST00000585074 65 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 AL353778.1-201ENST00000603149 408 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 AP000811.1-201ENST00000603803 651 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 AL031176.1-201ENST00000604554 466 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXC11O43248 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC11O43248 AL596245.1-201ENST00000618994 362 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 AC112200.1-201ENST00000625015 234 ntBASIC4.22□□□□□ -1.73
HOXC11O43248 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXC11O43248 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXC11O43248 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC11O43248 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC11O43248 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC11O43248 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC11O43248 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC11O43248 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.73
HOXC11O43248 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
HOXC11O43248 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.73
HOXC11O43248 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
HOXC11O43248 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
HOXC11O43248 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXC11O43248 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXC11O43248 AL161781.1-201ENST00000354277 403 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 RNU6-289P-201ENST00000364093 107 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 SNORA51.2-201ENST00000364595 132 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 RNA5SP88-201ENST00000365560 109 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 RNU6-723P-201ENST00000383973 107 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 RNU6-629P-201ENST00000384061 103 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
HOXC11O43248 RN7SKP202-201ENST00000410439 330 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 AC107081.1-201ENST00000414975 361 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 AC127526.1-201ENST00000417526 366 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 AC011233.1-201ENST00000422812 283 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 RPL7P2-201ENST00000427639 268 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 MTATP6P17-201ENST00000431030 672 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 EZH2P1-201ENST00000431167 291 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 AL606662.1-201ENST00000445763 553 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 AC010285.1-201ENST00000470580 392 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 AC017015.1-201ENST00000477387 286 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 AC092451.1-201ENST00000480211 153 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 AC110792.1-201ENST00000491826 472 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 AP001086.1-201ENST00000494882 321 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC4.21□□□□□ -1.74
HOXC11O43248 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
HOXC11O43248 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXC11O43248 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC11O43248 TXNP6-201ENST00000510190 310 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 NDUFB4P9-201ENST00000511646 388 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 RNU6-1129P-201ENST00000515964 104 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 SNORA31.20-201ENST00000517111 133 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC11O43248 AC109635.4-202ENST00000531666 412 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC11O43248 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXC11O43248 AC063950.1-201ENST00000552036 308 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXC11O43248 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXC11O43248 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXC11O43248 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXC11O43248 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXC11O43248 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXC11O43248 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXC11O43248 XIAPP1-201ENST00000603162 600 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 AC245389.1-201ENST00000605141 529 ntBASIC4.21□□□□□ -1.74
HOXC11O43248 AC090186.1-201ENST00000605991 572 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms