Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 RNU1-68P-201ENST00000615382 146 ntBASIC3.19□□□□□ -1.9
LSM1O15116 U1.39-201ENST00000621562 146 ntBASIC3.19□□□□□ -1.9
LSM1O15116 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.19□□□□□ -1.9
LSM1O15116 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
LSM1O15116 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LSM1O15116 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
LSM1O15116 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.18□□□□□ -1.9
LSM1O15116 MTND5P19-201ENST00000424872 1794 ntBASIC3.18□□□□□ -1.9
LSM1O15116 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LSM1O15116 RNU1-64P-201ENST00000365443 163 ntBASIC3.18□□□□□ -1.9
LSM1O15116 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LSM1O15116 MIR16-1-201ENST00000385271 89 ntBASIC3.18□□□□□ -1.9
LSM1O15116 RPL21P3-201ENST00000395517 478 ntBASIC3.18□□□□□ -1.9
LSM1O15116 RNA5SP229-201ENST00000410809 99 ntBASIC3.18□□□□□ -1.9
LSM1O15116 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.18□□□□□ -1.9
LSM1O15116 RAB9AP3-201ENST00000412737 573 ntBASIC3.18□□□□□ -1.9
LSM1O15116 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LSM1O15116 OR1AA1P-201ENST00000419597 916 ntBASIC3.18□□□□□ -1.9
LSM1O15116 YPEL5P1-201ENST00000419731 367 ntBASIC3.18□□□□□ -1.9
LSM1O15116 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.18□□□□□ -1.9
LSM1O15116 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.18□□□□□ -1.9
LSM1O15116 AC073063.1-201ENST00000434352 607 ntBASIC3.18□□□□□ -1.9
LSM1O15116 CST9LP2-201ENST00000437612 320 ntBASIC3.18□□□□□ -1.9
LSM1O15116 AC092641.1-201ENST00000440229 772 ntBASIC3.18□□□□□ -1.9
LSM1O15116 ATP5C1P1-201ENST00000441945 895 ntBASIC3.18□□□□□ -1.9
LSM1O15116 RAB9AP1-201ENST00000449393 573 ntBASIC3.18□□□□□ -1.9
LSM1O15116 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.18□□□□□ -1.9
LSM1O15116 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.18□□□□□ -1.9
LSM1O15116 OR6K1P-201ENST00000456766 971 ntBASIC3.18□□□□□ -1.9
LSM1O15116 AL136126.1-201ENST00000473603 402 ntBASIC3.18□□□□□ -1.9
LSM1O15116 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LSM1O15116 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LSM1O15116 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LSM1O15116 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.18□□□□□ -1.9
LSM1O15116 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.18□□□□□ -1.9
LSM1O15116 PAICSP4-201ENST00000517543 1253 ntBASIC3.18□□□□□ -1.9
LSM1O15116 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.18□□□□□ -1.9
LSM1O15116 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.18□□□□□ -1.9
LSM1O15116 AL121603.1-201ENST00000553815 142 ntBASIC3.18□□□□□ -1.9
LSM1O15116 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
LSM1O15116 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.18□□□□□ -1.9
LSM1O15116 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.18□□□□□ -1.9
LSM1O15116 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC3.18□□□□□ -1.9
LSM1O15116 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.18□□□□□ -1.9
LSM1O15116 BPTFP1-201ENST00000579209 492 ntBASIC3.18□□□□□ -1.9
LSM1O15116 RN7SL622P-201ENST00000585292 275 ntBASIC3.18□□□□□ -1.9
LSM1O15116 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC3.18□□□□□ -1.9
LSM1O15116 AL355812.1-201ENST00000603215 216 ntBASIC3.18□□□□□ -1.9
LSM1O15116 AC112503.2-201ENST00000609005 552 ntBASIC3.18□□□□□ -1.9
LSM1O15116 VIS1.1-201ENST00000610517 203 ntBASIC3.18□□□□□ -1.9
LSM1O15116 uc_338.1-201ENST00000612113 180 ntBASIC3.18□□□□□ -1.9
LSM1O15116 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
LSM1O15116 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LSM1O15116 AP002907.1-201ENST00000606361 1430 ntBASIC3.18□□□□□ -1.9
LSM1O15116 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LSM1O15116 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.18□□□□□ -1.9
LSM1O15116 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
LSM1O15116 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LSM1O15116 RNA5SP119-201ENST00000362715 117 ntBASIC3.17□□□□□ -1.9
LSM1O15116 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.17□□□□□ -1.9
LSM1O15116 RNU6-481P-201ENST00000384194 107 ntBASIC3.17□□□□□ -1.9
LSM1O15116 RNU6ATAC-201ENST00000408749 126 ntBASIC3.17□□□□□ -1.9
LSM1O15116 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.17□□□□□ -1.9
LSM1O15116 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.17□□□□□ -1.9
LSM1O15116 AC006960.1-201ENST00000419980 153 ntBASIC3.17□□□□□ -1.9
LSM1O15116 HSFY1P1-201ENST00000423928 1178 ntBASIC3.17□□□□□ -1.9
LSM1O15116 AC007389.2-201ENST00000434630 306 ntBASIC3.17□□□□□ -1.9
LSM1O15116 RPL21P23-201ENST00000446654 460 ntBASIC3.17□□□□□ -1.9
LSM1O15116 AL353718.1-201ENST00000451028 517 ntBASIC3.17□□□□□ -1.9
LSM1O15116 CDC42P1-201ENST00000456658 548 ntBASIC3.17□□□□□ -1.9
LSM1O15116 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC3.17□□□□□ -1.9
LSM1O15116 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC3.17□□□□□ -1.9
LSM1O15116 AC017015.1-201ENST00000477387 286 ntBASIC3.17□□□□□ -1.9
LSM1O15116 RN7SL499P-201ENST00000481141 276 ntBASIC3.17□□□□□ -1.9
LSM1O15116 AC118282.1-201ENST00000506408 765 ntBASIC3.17□□□□□ -1.9
LSM1O15116 AC004062.1-201ENST00000509926 645 ntBASIC3.17□□□□□ -1.9
LSM1O15116 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.17□□□□□ -1.9
LSM1O15116 AC119751.1-201ENST00000513357 765 ntBASIC3.17□□□□□ -1.9
LSM1O15116 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.17□□□□□ -1.9
LSM1O15116 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.17□□□□□ -1.9
LSM1O15116 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.17□□□□□ -1.9
LSM1O15116 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.17□□□□□ -1.9
LSM1O15116 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC3.17□□□□□ -1.9
LSM1O15116 AC055876.1-202ENST00000567053 138 ntBASIC3.17□□□□□ -1.9
LSM1O15116 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.17□□□□□ -1.9
LSM1O15116 DPRXP5-201ENST00000604662 539 ntBASIC3.17□□□□□ -1.9
LSM1O15116 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC3.17□□□□□ -1.9
LSM1O15116 AC243312.2-201ENST00000623340 601 ntBASIC3.17□□□□□ -1.9
LSM1O15116 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.17□□□□□ -1.9
LSM1O15116 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
LSM1O15116 SGO1P1-201ENST00000603525 1447 ntBASIC3.17□□□□□ -1.9
LSM1O15116 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.16□□□□□ -1.9
LSM1O15116 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
LSM1O15116 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.16□□□□□ -1.9
LSM1O15116 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
LSM1O15116 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
LSM1O15116 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
LSM1O15116 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
LSM1O15116 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.16□□□□□ -1.9
LSM1O15116 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms