Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 SNORD58B-201ENST00000607313 66 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 AL365434.2-201ENST00000607979 234 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 AL132640.3-201ENST00000630473 177 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 CDC123-202ENST00000378900 933 ntTSL 5 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 RPS4XP7-201ENST00000406274 780 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 PGBD4P6-201ENST00000421501 610 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 AC073910.1-201ENST00000445047 438 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 RPS24P6-201ENST00000452670 400 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 NDUFAF4P3-201ENST00000456468 525 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 HMGB1P25-201ENST00000468402 607 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 AL122020.1-201ENST00000472287 459 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 AC087385.1-201ENST00000475062 312 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 CREM-238ENST00000488741 651 ntTSL 2 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 RN7SKP40-201ENST00000517211 242 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 AC069113.1-201ENST00000517763 267 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 AP006245.2-201ENST00000522004 300 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 MIR4776-2-201ENST00000580204 80 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 SUMO2P15-201ENST00000604285 278 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 NANOGP3-201ENST00000605855 286 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 EIF3FP1-201ENST00000613970 806 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 MIR4496-201ENST00000635896 61 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 U6.104-201ENST00000637979 90 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 PABPC1P7-201ENST00000413177 1513 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 EIF2AP4-201ENST00000424793 1781 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 SAGE2P-201ENST00000420011 2126 ntBASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.38□□□□□ -1.39
LIMD1Q9UGP4 AP005435.3-201ENST00000531260 3198 ntBASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 Y_RNA.210-201ENST00000364161 110 ntBASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 AC019155.1-201ENST00000382242 574 ntBASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 Y_RNA.396-201ENST00000383949 103 ntBASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 RNU6-209P-201ENST00000384118 107 ntBASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 AC097374.1-203ENST00000400783 485 ntBASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 AL139039.1-201ENST00000401900 692 ntBASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 EEF1A1P29-201ENST00000416082 1096 ntBASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 AL137014.1-201ENST00000420490 1226 ntBASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 AC008065.1-201ENST00000428525 348 ntBASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 PSMA2P3-201ENST00000429685 675 ntBASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 ELOCP18-201ENST00000434209 337 ntBASIC6.37□□□□□ -1.39
LIMD1Q9UGP4 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 142.8 ms