Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AC011458.1-201ENST00000604034 617 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AL160237.3-201ENST00000604114 1013 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AC016597.2-201ENST00000613256 341 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 MTND2P41-201ENST00000637599 773 ntBASIC3.48□□□□□ -1.85
DDX28Q9NUL7 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
DDX28Q9NUL7 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 MIR372-201ENST00000362225 67 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 RNU6-989P-201ENST00000362756 107 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 RNU6-216P-201ENST00000363282 104 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 RNA5SP399-201ENST00000364003 117 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 SNORA7.2-201ENST00000364446 145 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 MIR670-201ENST00000390142 98 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 SNORA48.8-201ENST00000391324 134 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC016769.3-201ENST00000396562 315 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 ARF4P3-201ENST00000397387 509 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 SNORA57.3-201ENST00000411095 141 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AL161449.1-201ENST00000414531 1199 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AL389915.1-201ENST00000422463 466 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 HSFY1P1-201ENST00000423928 1178 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 MRPS18BP2-201ENST00000434310 759 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 RPL21P112-201ENST00000434403 463 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 NANOGP2-201ENST00000435391 727 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 VN1R10P-201ENST00000447106 875 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 MTCYBP11-201ENST00000447254 1109 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 VN1R34P-201ENST00000447387 883 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 RPS20P24-201ENST00000457473 361 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC092757.1-201ENST00000467293 467 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC034236.1-201ENST00000469891 373 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 RN7SKP31-201ENST00000516354 278 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 RNU1-45P-201ENST00000517191 141 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC015688.2-201ENST00000584523 262 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 RPP40P2-201ENST00000603596 712 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC124312.4-201ENST00000605533 310 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AL157392.4-201ENST00000609756 345 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AL450489.1-201ENST00000612071 468 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC006133.1-201ENST00000617106 264 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AL139089.1-201ENST00000620372 975 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 CYP3A51P-201ENST00000633513 256 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
DDX28Q9NUL7 NUP58P1-201ENST00000502546 1738 ntBASIC3.47□□□□□ -1.85
DDX28Q9NUL7 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.46□□□□□ -1.85
DDX28Q9NUL7 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 RNU5D-1-201ENST00000363299 116 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 MIR200C-201ENST00000384980 68 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 RNU6-821P-201ENST00000390995 107 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 ATP5F1P3-201ENST00000397213 657 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 PTMAP2-201ENST00000397627 327 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AL391417.1-201ENST00000404100 426 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AL138880.1-201ENST00000405824 642 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 RNU6ATAC-201ENST00000408749 126 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms