Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.41□□□□□ -2.02
CHD9Q3L8U1 AL445646.1-201ENST00000431784 216 ntBASIC2.41□□□□□ -2.02
CHD9Q3L8U1 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 MIR5092-201ENST00000583139 88 ntBASIC2.41□□□□□ -2.02
CHD9Q3L8U1 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC2.4□□□□□ -2.02
CHD9Q3L8U1 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.4□□□□□ -2.02
CHD9Q3L8U1 Y_RNA.269-201ENST00000364685 89 ntBASIC2.4□□□□□ -2.02
CHD9Q3L8U1 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.4□□□□□ -2.02
CHD9Q3L8U1 TRBV26-201ENST00000456572 344 ntBASIC2.4□□□□□ -2.02
CHD9Q3L8U1 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.4□□□□□ -2.02
CHD9Q3L8U1 AC011611.5-201ENST00000552477 578 ntBASIC2.4□□□□□ -2.02
CHD9Q3L8U1 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.02
CHD9Q3L8U1 RNU6-661P-201ENST00000362409 107 ntBASIC2.4□□□□□ -2.03
CHD9Q3L8U1 RNU6-295P-201ENST00000516901 104 ntBASIC2.4□□□□□ -2.03
CHD9Q3L8U1 MTCYBP20-201ENST00000524239 1129 ntBASIC2.4□□□□□ -2.03
CHD9Q3L8U1 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.4□□□□□ -2.03
CHD9Q3L8U1 AC010378.1-201ENST00000619270 362 ntBASIC2.4□□□□□ -2.03
CHD9Q3L8U1 AC026523.2-201ENST00000625039 7739 ntBASIC2.4□□□□□ -2.03
CHD9Q3L8U1 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
CHD9Q3L8U1 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC2.4□□□□□ -2.03
CHD9Q3L8U1 AL031985.3-201ENST00000565390 2449 ntBASIC2.4□□□□□ -2.03
CHD9Q3L8U1 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC2.4□□□□□ -2.03
CHD9Q3L8U1 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.39□□□□□ -2.03
CHD9Q3L8U1 AL162578.1-201ENST00000406202 378 ntBASIC2.39□□□□□ -2.03
CHD9Q3L8U1 PPIAP17-201ENST00000438507 471 ntBASIC2.39□□□□□ -2.03
CHD9Q3L8U1 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.39□□□□□ -2.03
CHD9Q3L8U1 U7.8-201ENST00000619968 63 ntBASIC2.39□□□□□ -2.03
CHD9Q3L8U1 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC2.39□□□□□ -2.03
CHD9Q3L8U1 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
CHD9Q3L8U1 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
CHD9Q3L8U1 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.39□□□□□ -2.03
CHD9Q3L8U1 RN7SKP60-201ENST00000516985 239 ntBASIC2.39□□□□□ -2.03
CHD9Q3L8U1 AC008121.2-201ENST00000614647 523 ntBASIC2.39□□□□□ -2.03
CHD9Q3L8U1 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC2.39□□□□□ -2.03
CHD9Q3L8U1 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC2.39□□□□□ -2.03
CHD9Q3L8U1 MIR221-201ENST00000385135 110 ntBASIC2.39□□□□□ -2.03
CHD9Q3L8U1 RNA5SP270-201ENST00000411361 118 ntBASIC2.39□□□□□ -2.03
CHD9Q3L8U1 AC009414.1-201ENST00000427200 443 ntBASIC2.39□□□□□ -2.03
CHD9Q3L8U1 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC2.39□□□□□ -2.03
CHD9Q3L8U1 AC126182.1-201ENST00000478134 357 ntBASIC2.39□□□□□ -2.03
CHD9Q3L8U1 AC011037.1-201ENST00000483964 558 ntBASIC2.39□□□□□ -2.03
CHD9Q3L8U1 AC025125.1-201ENST00000624743 1922 ntBASIC2.39□□□□□ -2.03
CHD9Q3L8U1 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 AL035551.1-201ENST00000446931 348 ntBASIC2.38□□□□□ -2.03
CHD9Q3L8U1 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 AC128687.1-201ENST00000605304 619 ntBASIC2.38□□□□□ -2.03
CHD9Q3L8U1 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 AC016542.2-201ENST00000624201 619 ntBASIC2.38□□□□□ -2.03
CHD9Q3L8U1 FRG1DP-201ENST00000635586 771 ntBASIC2.38□□□□□ -2.03
CHD9Q3L8U1 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 MIR7-2-201ENST00000384970 110 ntBASIC2.38□□□□□ -2.03
CHD9Q3L8U1 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC2.38□□□□□ -2.03
CHD9Q3L8U1 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC2.37□□□□□ -2.03
CHD9Q3L8U1 MIR378A-201ENST00000362177 66 ntBASIC2.37□□□□□ -2.03
CHD9Q3L8U1 SETP15-201ENST00000412724 337 ntBASIC2.37□□□□□ -2.03
CHD9Q3L8U1 MTCO2P17-201ENST00000424336 677 ntBASIC2.37□□□□□ -2.03
CHD9Q3L8U1 TRIM60P18-201ENST00000441518 828 ntBASIC2.37□□□□□ -2.03
CHD9Q3L8U1 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.37□□□□□ -2.03
CHD9Q3L8U1 AC123904.3-201ENST00000547218 814 ntBASIC2.37□□□□□ -2.03
CHD9Q3L8U1 AC002064.3-201ENST00000623448 346 ntBASIC2.37□□□□□ -2.03
CHD9Q3L8U1 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CHD9Q3L8U1 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
CHD9Q3L8U1 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.37□□□□□ -2.03
CHD9Q3L8U1 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.37□□□□□ -2.03
CHD9Q3L8U1 AC098826.1-201ENST00000433943 471 ntBASIC2.37□□□□□ -2.03
CHD9Q3L8U1 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.37□□□□□ -2.03
CHD9Q3L8U1 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.37□□□□□ -2.03
CHD9Q3L8U1 AC004925.1-201ENST00000624256 2706 ntBASIC2.37□□□□□ -2.03
CHD9Q3L8U1 AC005539.1-201ENST00000443768 1479 ntBASIC2.37□□□□□ -2.03
CHD9Q3L8U1 MTND4P10-201ENST00000446199 1363 ntBASIC2.36□□□□□ -2.03
CHD9Q3L8U1 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC2.36□□□□□ -2.03
CHD9Q3L8U1 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms