Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RPL7P54-201ENST00000438336 674 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 HMGB3P12-201ENST00000438745 556 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AC127537.2-201ENST00000439258 465 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXA4Q00056 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA4Q00056 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA4Q00056 AC114755.5-201ENST00000447760 831 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AL136380.1-201ENST00000447970 162 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AMD1P1-201ENST00000457220 922 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA4Q00056 RN7SL809P-201ENST00000482040 297 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AC073073.1-201ENST00000493920 463 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXA4Q00056 RNF138P1-201ENST00000502765 546 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AC018710.1-201ENST00000506509 158 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.04□□□□□ -1.76
HOXA4Q00056 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXA4Q00056 NPM1P41-201ENST00000512920 831 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 ENPP7P9-201ENST00000514456 627 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AF235103.2-201ENST00000525753 346 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 RAB11AP2-201ENST00000545905 639 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA4Q00056 FKBP1BP1-201ENST00000553366 325 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA4Q00056 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXA4Q00056 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA4Q00056 MIR4443-201ENST00000585052 53 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA4Q00056 AC025588.3-201ENST00000604182 274 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AL035413.2-201ENST00000604801 525 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AP001330.5-201ENST00000607176 411 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AP001521.2-201ENST00000608772 546 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 AC093788.1-201ENST00000609356 927 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXA4Q00056 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXA4Q00056 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
HOXA4Q00056 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA4Q00056 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA4Q00056 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA4Q00056 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA4Q00056 NMD3P1-201ENST00000439704 1488 ntBASIC4.04□□□□□ -1.76
HOXA4Q00056 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA4Q00056 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
HOXA4Q00056 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA4Q00056 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.04□□□□□ -1.76
HOXA4Q00056 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA4Q00056 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA4Q00056 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXA4Q00056 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA4Q00056 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA4Q00056 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
HOXA4Q00056 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA4Q00056 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
HOXA4Q00056 AL590240.1-201ENST00000334118 313 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 RN7SKP103-201ENST00000363848 320 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 RNU6-169P-201ENST00000365336 107 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
HOXA4Q00056 RNU6-456P-201ENST00000384493 107 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 RNU6-908P-201ENST00000410160 94 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 CTSL3P-202ENST00000412179 788 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 OR51A5P-201ENST00000415429 942 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 ZNF90P2-204ENST00000419323 1075 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 AC245054.1-201ENST00000420944 258 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 AC092832.1-201ENST00000422934 400 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA4Q00056 AC006548.1-201ENST00000427470 102 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXA4Q00056 AC092162.1-201ENST00000432828 434 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 AC098614.3-201ENST00000438957 440 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 AC012512.1-201ENST00000446594 718 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA4Q00056 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA4Q00056 RAD23BP3-201ENST00000454157 1152 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 PPIAP21-201ENST00000464473 501 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXA4Q00056 AP000852.1-201ENST00000472460 573 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA4Q00056 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA4Q00056 AL671862.1-201ENST00000515851 349 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA4Q00056 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.03□□□□□ -1.76
HOXA4Q00056 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA4Q00056 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA4Q00056 HIF1AP1-201ENST00000553642 175 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 AL359212.1-201ENST00000556608 614 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.03□□□□□ -1.76
HOXA4Q00056 MIR5699-201ENST00000578903 90 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 SNORA74C-1-201ENST00000580726 201 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 MIR3667-201ENST00000581025 74 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 MIR4472-2-201ENST00000582069 67 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 UBE2L4-201ENST00000587688 464 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA4Q00056 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA4Q00056 AL356055.1-201ENST00000602528 446 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 AL136363.1-201ENST00000605349 337 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 AL121932.1-201ENST00000605542 214 ntBASIC4.03□□□□□ -1.76
HOXA4Q00056 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA4Q00056 AL158801.5-201ENST00000623123 465 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms