Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
RNF4P78317 AC079776.5-201ENST00000641920 211 ntBASIC5.09□□□□□ -1.59
RNF4P78317 AC138907.8-201ENST00000623981 2256 ntBASIC5.09□□□□□ -1.59
RNF4P78317 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.09□□□□□ -1.6
RNF4P78317 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
RNF4P78317 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
RNF4P78317 AC093775.1-201ENST00000624154 1868 ntBASIC5.09□□□□□ -1.6
RNF4P78317 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.09□□□□□ -1.6
RNF4P78317 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
RNF4P78317 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.09□□□□□ -1.6
RNF4P78317 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.09□□□□□ -1.6
RNF4P78317 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
RNF4P78317 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.08□□□□□ -1.6
RNF4P78317 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
RNF4P78317 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
RNF4P78317 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
RNF4P78317 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
RNF4P78317 AP001350.1-201ENST00000601906 1524 ntBASIC5.08□□□□□ -1.6
RNF4P78317 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.08□□□□□ -1.6
RNF4P78317 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
RNF4P78317 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
RNF4P78317 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.08□□□□□ -1.6
RNF4P78317 AL139276.1-201ENST00000311910 1001 ntBASIC5.08□□□□□ -1.6
RNF4P78317 RN7SKP162-201ENST00000363605 345 ntBASIC5.08□□□□□ -1.6
RNF4P78317 Y_RNA.301-201ENST00000364990 103 ntBASIC5.08□□□□□ -1.6
RNF4P78317 Y_RNA.378-201ENST00000365652 113 ntBASIC5.08□□□□□ -1.6
RNF4P78317 Y_RNA.414-201ENST00000384011 101 ntBASIC5.08□□□□□ -1.6
RNF4P78317 AC009804.1-201ENST00000400949 179 ntBASIC5.08□□□□□ -1.6
RNF4P78317 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC5.08□□□□□ -1.6
RNF4P78317 BEND7P1-201ENST00000422058 457 ntBASIC5.08□□□□□ -1.6
RNF4P78317 EZH2P1-201ENST00000431167 291 ntBASIC5.08□□□□□ -1.6
RNF4P78317 AL359265.2-201ENST00000434367 631 ntBASIC5.08□□□□□ -1.6
RNF4P78317 LINC02210-201ENST00000444561 288 ntBASIC5.08□□□□□ -1.6
RNF4P78317 GEMIN8P3-201ENST00000445417 720 ntBASIC5.08□□□□□ -1.6
RNF4P78317 AC105399.1-202ENST00000447303 205 ntBASIC5.08□□□□□ -1.6
RNF4P78317 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC5.08□□□□□ -1.6
RNF4P78317 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC5.08□□□□□ -1.6
RNF4P78317 Y_RNA.639-201ENST00000458981 102 ntBASIC5.08□□□□□ -1.6
RNF4P78317 Y_RNA.635-201ENST00000459041 101 ntBASIC5.08□□□□□ -1.6
RNF4P78317 RNU7-66P-201ENST00000459469 62 ntBASIC5.08□□□□□ -1.6
RNF4P78317 AP000942.1-201ENST00000463969 747 ntBASIC5.08□□□□□ -1.6
RNF4P78317 AC130509.1-201ENST00000464158 433 ntBASIC5.08□□□□□ -1.6
RNF4P78317 ALDH7A1P3-201ENST00000492517 345 ntBASIC5.08□□□□□ -1.6
RNF4P78317 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC5.08□□□□□ -1.6
RNF4P78317 RN7SL284P-201ENST00000498823 275 ntBASIC5.08□□□□□ -1.6
RNF4P78317 AC005741.1-201ENST00000511094 432 ntBASIC5.08□□□□□ -1.6
RNF4P78317 RNA5SP92-201ENST00000516437 110 ntBASIC5.08□□□□□ -1.6
RNF4P78317 Y_RNA.682-201ENST00000516457 100 ntBASIC5.08□□□□□ -1.6
RNF4P78317 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.08□□□□□ -1.6
RNF4P78317 FAM60DP-201ENST00000524174 632 ntBASIC5.08□□□□□ -1.6
RNF4P78317 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC5.08□□□□□ -1.6
RNF4P78317 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC5.08□□□□□ -1.6
RNF4P78317 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.08□□□□□ -1.6
RNF4P78317 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.08□□□□□ -1.6
RNF4P78317 AC005341.1-201ENST00000571086 708 ntBASIC5.08□□□□□ -1.6
RNF4P78317 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.08□□□□□ -1.6
RNF4P78317 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.08□□□□□ -1.6
RNF4P78317 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
RNF4P78317 AC092807.2-201ENST00000609367 243 ntBASIC5.08□□□□□ -1.6
RNF4P78317 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
RNF4P78317 uc_338.34-201ENST00000617467 174 ntBASIC5.08□□□□□ -1.6
RNF4P78317 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.08□□□□□ -1.6
RNF4P78317 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.08□□□□□ -1.6
RNF4P78317 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
RNF4P78317 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
RNF4P78317 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
RNF4P78317 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
RNF4P78317 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
RNF4P78317 AC009962.1-201ENST00000567327 3813 ntBASIC5.08□□□□□ -1.6
RNF4P78317 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
RNF4P78317 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
RNF4P78317 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.08□□□□□ -1.6
RNF4P78317 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.07□□□□□ -1.6
RNF4P78317 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
RNF4P78317 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.07□□□□□ -1.6
RNF4P78317 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
RNF4P78317 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.07□□□□□ -1.6
RNF4P78317 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
RNF4P78317 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 RNU6-1252P-201ENST00000363054 104 ntBASIC5.07□□□□□ -1.6
RNF4P78317 RNU6-179P-201ENST00000363350 107 ntBASIC5.07□□□□□ -1.6
RNF4P78317 RNU6-188P-201ENST00000364207 107 ntBASIC5.07□□□□□ -1.6
RNF4P78317 RNU6-1078P-201ENST00000364522 103 ntBASIC5.07□□□□□ -1.6
RNF4P78317 Y_RNA.530-201ENST00000384587 101 ntBASIC5.07□□□□□ -1.6
RNF4P78317 ENSAP1-201ENST00000392855 326 ntBASIC5.07□□□□□ -1.6
RNF4P78317 DBIP1-201ENST00000401435 260 ntBASIC5.07□□□□□ -1.6
RNF4P78317 AL359634.1-202ENST00000404721 284 ntBASIC5.07□□□□□ -1.6
RNF4P78317 MIR548F5-201ENST00000408421 86 ntBASIC5.07□□□□□ -1.6
RNF4P78317 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 140.5 ms