Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC6.3□□□□□ -1.4
CCDC9Q9Y3X0 AL445487.1-201ENST00000415694 1580 ntBASIC6.3□□□□□ -1.4
CCDC9Q9Y3X0 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC9Q9Y3X0 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC9Q9Y3X0 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC9Q9Y3X0 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC9Q9Y3X0 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC9Q9Y3X0 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
CCDC9Q9Y3X0 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 TLK1P1-201ENST00000456760 2440 ntBASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 Y_RNA.333-201ENST00000365274 102 ntBASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 OR1L6-202ENST00000373684 1044 ntBASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 SNORA40.3-201ENST00000390964 122 ntBASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 AL138880.1-201ENST00000405824 642 ntBASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 USP9YP13-201ENST00000417797 480 ntBASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 AC006366.1-201ENST00000422002 759 ntBASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 RPL23AP41-201ENST00000484754 458 ntBASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 AP000907.2-201ENST00000530827 353 ntBASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 AC090181.2-201ENST00000602975 672 ntBASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 AC008250.2-201ENST00000615261 205 ntBASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 AL139089.1-201ENST00000620372 975 ntBASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 U3.53-201ENST00000628922 216 ntBASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC9Q9Y3X0 MTND5P33-201ENST00000571250 1450 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 RNU6-629P-201ENST00000384061 103 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 RNU6-1181P-201ENST00000384191 106 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 Y_RNA.559-201ENST00000384686 107 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 SNORD115.1-201ENST00000391109 76 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 RPL21P67-201ENST00000402896 478 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 RPL7P25-201ENST00000404151 721 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 FCF1P10-201ENST00000407590 479 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 OR1AA1P-201ENST00000419597 916 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 RPL7AP49-201ENST00000429522 581 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AL591438.1-201ENST00000433508 581 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AC090804.1-201ENST00000448870 490 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 RPS17P13-201ENST00000448974 407 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AL033528.1-201ENST00000453780 140 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AC079168.2-201ENST00000453977 416 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 UBDP1-202ENST00000457888 382 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AC078817.1-201ENST00000492623 435 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AC073073.1-201ENST00000493920 463 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 ARL2BPP4-201ENST00000506854 471 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 PARP4P3-201ENST00000510265 317 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 NPM1P41-201ENST00000512920 831 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 Y_RNA.655-201ENST00000515919 96 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 SNORA31.20-201ENST00000517111 133 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 IGKV2-23-201ENST00000518729 323 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 OR4K8P-201ENST00000578842 1048 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 SNORA74C-1-201ENST00000580726 201 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 MIR4444-1-201ENST00000581696 74 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 MIR4444-2-201ENST00000584390 74 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 UBE2L4-201ENST00000587688 464 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AC068790.3-201ENST00000602988 553 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AL139286.2-201ENST00000606838 396 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AC138749.5-201ENST00000611461 208 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AC116165.2-201ENST00000616705 206 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AL158801.5-201ENST00000623123 465 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 AC010149.2-201ENST00000637608 315 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 TEX21P-201ENST00000447107 1476 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 Z95331.1-201ENST00000623075 23112 ntBASIC6.28□□□□□ -1.4
CCDC9Q9Y3X0 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms