Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 RNA5SP223-201ENST00000365174 120 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 RNU4-20P-201ENST00000365601 151 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 Y_RNA.422-201ENST00000384054 114 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 SNORA5.1-201ENST00000384275 131 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 RNU2-62P-201ENST00000410868 191 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 NPM1P40-201ENST00000412758 733 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AC127526.1-201ENST00000417526 366 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 RPL19P16-201ENST00000433839 588 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 RHOT1P3-201ENST00000436571 331 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 PABPC1P3-201ENST00000469174 459 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AL163973.1-201ENST00000484753 577 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AL163540.1-201ENST00000485382 386 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AC090096.1-201ENST00000489168 390 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AC005741.1-201ENST00000511094 432 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 SOD1P3-201ENST00000518682 454 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 CASP1-212ENST00000531166 300 ntTSL 5 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 OR4T1P-201ENST00000554933 911 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 MIR4691-201ENST00000583764 85 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 MIR7853-201ENST00000584820 132 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AC040168.1-201ENST00000623594 991 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 TTK-211ENST00000627129 240 ntTSL 5 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 OR2L1P-202ENST00000641567 1023 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 EEF1A1P36-201ENST00000427807 1351 ntBASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CHMP3Q9Y3E7 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 Y_RNA.202-201ENST00000364083 110 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 RNU6-729P-201ENST00000384399 107 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 RNU6-441P-201ENST00000384545 106 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 MIR585-201ENST00000384887 94 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 CHEK2P3-201ENST00000416118 248 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AL451054.2-201ENST00000420896 202 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 MRPS21P2-201ENST00000424704 264 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 MTCO3P21-201ENST00000430791 643 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AL356276.2-201ENST00000435919 558 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AL772161.1-201ENST00000439130 476 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 RPL34P20-201ENST00000442771 351 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AC073415.1-201ENST00000449240 153 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 RN7SKP256-201ENST00000517201 314 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 RAD21-204ENST00000518055 896 ntTSL 2 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AP001922.4-201ENST00000526967 290 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 POLR3GP2-201ENST00000588366 668 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AC124312.5-201ENST00000604451 268 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AC016925.2-201ENST00000605108 242 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 AC079597.1-201ENST00000624306 508 ntBASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CHMP3Q9Y3E7 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms