Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AC005332.10-201ENST00000612725 619 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AC099842.1-201ENST00000619919 596 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AC093591.3-201ENST00000634516 308 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 KPNA2P2-201ENST00000419546 1489 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 DCAF13P1-201ENST00000495256 1330 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 AC068254.2-201ENST00000623938 3577 ntBASIC4.93□□□□□ -1.62
LIMCH1Q9UPQ0 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 ASNSP1-201ENST00000518311 1939 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 RNU5E-5P-201ENST00000365379 116 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 B3GALNT1P1-201ENST00000420569 975 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 NANOGP6-201ENST00000429190 847 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 C8orf59P1-201ENST00000429930 303 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 Z74696.2-201ENST00000436514 498 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AL772161.1-201ENST00000439130 476 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AC109327.1-201ENST00000471666 403 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AC104563.1-201ENST00000476147 376 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 RPL35P6-201ENST00000490024 372 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AC109464.2-201ENST00000510242 943 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AC022861.1-201ENST00000522981 663 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 LARP7P2-201ENST00000575306 125 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AC073648.5-201ENST00000603502 305 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AC103710.4-201ENST00000609301 899 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 Z99129.1-201ENST00000612510 255 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AC027807.2-201ENST00000616099 408 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AC138932.5-201ENST00000617759 563 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AC233309.1-201ENST00000619522 751 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AP005264.7-201ENST00000625003 745 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 CYP3A51P-201ENST00000633513 256 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 FAM157B-203ENST00000639350 358 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 TEX21P-201ENST00000447107 1476 ntBASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.92□□□□□ -1.62
LIMCH1Q9UPQ0 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 RNU6-952P-201ENST00000391164 108 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 MTCO2P5-201ENST00000422621 426 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 RPL30P3-201ENST00000424262 333 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 USP9YP14-201ENST00000430663 563 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 MTND5P14-201ENST00000441481 1267 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 PDSS1P2-201ENST00000449397 678 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 MTND1P27-201ENST00000451117 902 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AC104073.1-201ENST00000451988 151 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 RPL23AP24-201ENST00000458203 385 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 RPL31P50-201ENST00000471002 296 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AC139783.2-201ENST00000504847 1145 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AL117351.2-201ENST00000513571 157 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 IGKV2-38-201ENST00000517443 247 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AP002453.2-201ENST00000533503 320 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms