Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AL672167.1-203ENST00000641299 2975 ntBASIC4.72□□□□□ -1.65
MKS1Q9NXB0 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
MKS1Q9NXB0 AC106871.1-201ENST00000568324 3102 ntBASIC4.72□□□□□ -1.65
MKS1Q9NXB0 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
MKS1Q9NXB0 AC005832.2-201ENST00000538921 1430 ntBASIC4.72□□□□□ -1.65
MKS1Q9NXB0 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 RNU2-8P-201ENST00000410727 190 ntBASIC4.71□□□□□ -1.66
MKS1Q9NXB0 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 USP9YP36-201ENST00000424581 829 ntBASIC4.71□□□□□ -1.66
MKS1Q9NXB0 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 ARPC3P1-201ENST00000437218 533 ntBASIC4.71□□□□□ -1.66
MKS1Q9NXB0 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 RPL23AP56-201ENST00000460778 453 ntBASIC4.71□□□□□ -1.66
MKS1Q9NXB0 AC025164.1-201ENST00000496249 478 ntBASIC4.71□□□□□ -1.66
MKS1Q9NXB0 AC022483.1-201ENST00000514020 567 ntBASIC4.71□□□□□ -1.66
MKS1Q9NXB0 RNA5SP362-201ENST00000516048 118 ntBASIC4.71□□□□□ -1.66
MKS1Q9NXB0 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 AC087883.1-201ENST00000551882 391 ntBASIC4.71□□□□□ -1.66
MKS1Q9NXB0 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 AL391840.1-201ENST00000571144 367 ntBASIC4.71□□□□□ -1.66
MKS1Q9NXB0 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 MEMO1P5-201ENST00000604810 406 ntBASIC4.71□□□□□ -1.66
MKS1Q9NXB0 AL356585.4-201ENST00000623078 1229 ntBASIC4.71□□□□□ -1.66
MKS1Q9NXB0 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 AC092435.4-201ENST00000623012 4159 ntBASIC4.71□□□□□ -1.66
MKS1Q9NXB0 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
MKS1Q9NXB0 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AC025031.4-201ENST00000621248 3271 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AC139713.2-215ENST00000641428 5037 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 RNU6-837P-201ENST00000391056 108 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AL603766.1-201ENST00000407763 664 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 U3.36-201ENST00000408418 213 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 RAD23BP2-201ENST00000416003 1207 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 EIF4EP1-201ENST00000422311 642 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AC092832.1-201ENST00000422934 400 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AL391987.1-201ENST00000441025 200 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 MTND1P9-201ENST00000453775 944 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 RN7SL174P-201ENST00000475578 289 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 MRPS33P2-201ENST00000507850 322 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 BX510359.5-201ENST00000515651 304 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 RN7SKP244-201ENST00000516513 307 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 RNU6-528P-201ENST00000516926 100 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AC107934.1-201ENST00000522215 217 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 DEFB108A-201ENST00000530110 222 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 UBE2FP2-201ENST00000566646 462 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 MIR5699-201ENST00000578903 90 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AC007684.1-201ENST00000609671 477 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AC091953.2-201ENST00000623979 160 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 AC068880.5-201ENST00000624331 290 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 SEPT14P19-203ENST00000633205 211 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 MIR4302-201ENST00000638058 60 ntBASIC4.7□□□□□ -1.66
MKS1Q9NXB0 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.7□□□□□ -1.66
MKS1Q9NXB0 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms