Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 RNU6-1207P-201ENST00000384343 107 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 RNU4-25P-201ENST00000410569 230 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 HMGB1P12-201ENST00000438594 598 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 RN7SL98P-201ENST00000462271 300 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 RN7SL385P-201ENST00000468873 276 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 AC011276.1-201ENST00000469688 323 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 AP001086.1-201ENST00000494882 321 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 AC106872.3-201ENST00000495104 446 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 DUXAP5-201ENST00000529668 529 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 SNRPGP16-201ENST00000533275 226 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 OR4K8P-201ENST00000578842 1048 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 MIR4697-201ENST00000582977 78 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 MTCO1P9-201ENST00000505577 1534 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 AL133383.2-201ENST00000622958 2336 ntBASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
HERPUD2Q9BSE4 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AC126755.2-208ENST00000327792 462 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AC138969.1-213ENST00000331436 462 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 RPL32P3-201ENST00000359025 275 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 SNORD74.4-201ENST00000364129 80 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 RNA5SP36-201ENST00000410197 133 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 RN7SKP235-201ENST00000410662 305 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 RNA5SP306-201ENST00000411087 107 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 MTCO1P17-201ENST00000411522 491 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 CCDC58P2-201ENST00000417131 366 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 MTCYBP39-201ENST00000437562 491 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 MTCO3P16-201ENST00000454456 754 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 RPL23AP31-201ENST00000456160 467 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 RN7SL585P-201ENST00000470538 280 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AC006517.1-201ENST00000480485 328 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 HMGB1P36-201ENST00000487709 576 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 RPS3AP22-201ENST00000488297 769 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 POU5F1P7-201ENST00000508759 541 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 RNA5SP519-201ENST00000516480 119 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 BNIP3P23-201ENST00000599655 511 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AP001330.4-201ENST00000604350 154 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AL022099.1-201ENST00000604551 712 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AC018714.1-201ENST00000605028 208 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AC092354.2-201ENST00000607786 514 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 AC140479.6-201ENST00000633535 357 ntBASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HERPUD2Q9BSE4 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
HERPUD2Q9BSE4 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.37□□□□□ -1.71
HERPUD2Q9BSE4 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.37□□□□□ -1.71
HERPUD2Q9BSE4 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
HERPUD2Q9BSE4 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HERPUD2Q9BSE4 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HERPUD2Q9BSE4 AL158163.1-201ENST00000603915 1649 ntBASIC4.37□□□□□ -1.71
HERPUD2Q9BSE4 FRG1BP-201ENST00000278882 761 ntBASIC4.37□□□□□ -1.71
HERPUD2Q9BSE4 RNU6-359P-201ENST00000365466 108 ntBASIC4.37□□□□□ -1.71
HERPUD2Q9BSE4 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HERPUD2Q9BSE4 AF228730.1-201ENST00000397972 663 ntBASIC4.37□□□□□ -1.71
HERPUD2Q9BSE4 RN7SKP266-201ENST00000410232 287 ntBASIC4.37□□□□□ -1.71
HERPUD2Q9BSE4 RNA5SP39-201ENST00000411245 120 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms