Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.84□□□□□ -1.79
USP28Q96RU2 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.84□□□□□ -1.79
USP28Q96RU2 HMGB3P8-201ENST00000449709 577 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
USP28Q96RU2 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.84□□□□□ -1.79
USP28Q96RU2 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.84□□□□□ -1.79
USP28Q96RU2 MTND4LP31-201ENST00000514859 294 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 RN7SKP277-201ENST00000516895 283 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 IGJP1-201ENST00000522682 475 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.84□□□□□ -1.79
USP28Q96RU2 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.84□□□□□ -1.79
USP28Q96RU2 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
USP28Q96RU2 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC3.84□□□□□ -1.79
USP28Q96RU2 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.84□□□□□ -1.79
USP28Q96RU2 AC004024.1-201ENST00000549244 247 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.84□□□□□ -1.79
USP28Q96RU2 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.84□□□□□ -1.79
USP28Q96RU2 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC3.84□□□□□ -1.79
USP28Q96RU2 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
USP28Q96RU2 AC091057.2-201ENST00000602594 792 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC3.84□□□□□ -1.79
USP28Q96RU2 ELOCP35-201ENST00000604289 336 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 AC002487.1-201ENST00000604565 994 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 MIR7851-201ENST00000610611 160 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 AC022079.1-201ENST00000621546 602 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.84□□□□□ -1.79
USP28Q96RU2 MIR4278-201ENST00000636094 69 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 LINC02211-204ENST00000642024 1070 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
USP28Q96RU2 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
USP28Q96RU2 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.8
USP28Q96RU2 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.84□□□□□ -1.8
USP28Q96RU2 CR383658.2-201ENST00000547576 1525 ntBASIC3.84□□□□□ -1.8
USP28Q96RU2 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
USP28Q96RU2 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
USP28Q96RU2 NSRP1P1-201ENST00000444067 1693 ntBASIC3.84□□□□□ -1.8
USP28Q96RU2 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.84□□□□□ -1.8
USP28Q96RU2 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP28Q96RU2 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP28Q96RU2 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP28Q96RU2 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
USP28Q96RU2 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.83□□□□□ -1.8
USP28Q96RU2 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP28Q96RU2 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP28Q96RU2 SNORD116.1-201ENST00000365628 92 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 RNU6-549P-201ENST00000384433 107 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 TAS2R15P-201ENST00000390674 928 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 RNU6-328P-201ENST00000390887 106 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 SNORA11C-201ENST00000408532 129 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 RNA5SP107-201ENST00000411358 122 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC3.83□□□□□ -1.8
USP28Q96RU2 OR4K6P-201ENST00000416478 897 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.83□□□□□ -1.8
USP28Q96RU2 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.83□□□□□ -1.8
USP28Q96RU2 AC073063.1-201ENST00000434352 607 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP28Q96RU2 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC3.83□□□□□ -1.8
USP28Q96RU2 ISCA1P2-201ENST00000438679 421 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 UBE2V1P5-201ENST00000440070 405 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 HMGB3P6-201ENST00000444896 598 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 NPM1P13-201ENST00000452663 865 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 RNU7-170P-201ENST00000459303 61 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 RPL23AP14-201ENST00000468281 468 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
USP28Q96RU2 AC073522.1-201ENST00000483312 377 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 AC068587.1-201ENST00000483613 781 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP28Q96RU2 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.83□□□□□ -1.8
USP28Q96RU2 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.83□□□□□ -1.8
USP28Q96RU2 AC108078.3-201ENST00000502633 489 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 AC084024.2-201ENST00000503480 791 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.83□□□□□ -1.8
USP28Q96RU2 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.83□□□□□ -1.8
USP28Q96RU2 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.83□□□□□ -1.8
USP28Q96RU2 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.83□□□□□ -1.8
USP28Q96RU2 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.83□□□□□ -1.8
USP28Q96RU2 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.83□□□□□ -1.8
USP28Q96RU2 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.83□□□□□ -1.8
USP28Q96RU2 MTND4P33-201ENST00000556706 766 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.83□□□□□ -1.8
USP28Q96RU2 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.83□□□□□ -1.8
USP28Q96RU2 MIR3922-201ENST00000585192 84 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.83□□□□□ -1.8
USP28Q96RU2 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.83□□□□□ -1.8
USP28Q96RU2 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.83□□□□□ -1.8
USP28Q96RU2 VN1R78P-201ENST00000597393 564 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 AL020997.3-201ENST00000602843 359 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP28Q96RU2 AC024257.5-201ENST00000612739 531 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 AC021755.4-201ENST00000616620 456 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 AC048344.4-201ENST00000619744 527 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.83□□□□□ -1.8
USP28Q96RU2 AC039056.2-201ENST00000622261 511 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 CU459211.1-201ENST00000635667 749 ntBASIC3.83□□□□□ -1.8
USP28Q96RU2 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP28Q96RU2 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.83□□□□□ -1.8
USP28Q96RU2 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP28Q96RU2 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.83□□□□□ -1.8
USP28Q96RU2 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms