Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC0.84□□□□□ -2.27
SYNE1Q8NF91 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC0.84□□□□□ -2.27
SYNE1Q8NF91 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC0.84□□□□□ -2.27
SYNE1Q8NF91 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC0.84□□□□□ -2.27
SYNE1Q8NF91 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC0.84□□□□□ -2.27
SYNE1Q8NF91 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC0.84□□□□□ -2.27
SYNE1Q8NF91 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC0.84□□□□□ -2.27
SYNE1Q8NF91 AL136964.1-201ENST00000622038 2990 ntBASIC0.84□□□□□ -2.27
SYNE1Q8NF91 AC103798.2-201ENST00000624292 632 ntBASIC0.84□□□□□ -2.27
SYNE1Q8NF91 CUL1P1-201ENST00000509510 2425 ntBASIC0.84□□□□□ -2.27
SYNE1Q8NF91 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.27
SYNE1Q8NF91 RNA5SP99-201ENST00000364020 114 ntBASIC0.84□□□□□ -2.27
SYNE1Q8NF91 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC0.84□□□□□ -2.27
SYNE1Q8NF91 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC0.84□□□□□ -2.27
SYNE1Q8NF91 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC0.84□□□□□ -2.27
SYNE1Q8NF91 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC0.84□□□□□ -2.27
SYNE1Q8NF91 MIR6817-201ENST00000615588 66 ntBASIC0.84□□□□□ -2.27
SYNE1Q8NF91 MIR622-201ENST00000638396 96 ntBASIC0.84□□□□□ -2.27
SYNE1Q8NF91 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 UBE2D3P1-201ENST00000436669 444 ntBASIC0.84□□□□□ -2.28
SYNE1Q8NF91 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 RPL21P18-201ENST00000469899 480 ntBASIC0.84□□□□□ -2.28
SYNE1Q8NF91 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 MIR449C-201ENST00000516047 92 ntBASIC0.84□□□□□ -2.28
SYNE1Q8NF91 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 AL365503.1-201ENST00000605247 905 ntBASIC0.84□□□□□ -2.28
SYNE1Q8NF91 AC069234.5-201ENST00000611056 416 ntBASIC0.84□□□□□ -2.28
SYNE1Q8NF91 AC079228.1-201ENST00000624774 1049 ntBASIC0.84□□□□□ -2.28
SYNE1Q8NF91 ZNF33CP-201ENST00000432492 2030 ntBASIC0.84□□□□□ -2.28
SYNE1Q8NF91 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 RNU6-1159P-201ENST00000362933 107 ntBASIC0.84□□□□□ -2.28
SYNE1Q8NF91 MIR518E-201ENST00000385252 88 ntBASIC0.84□□□□□ -2.28
SYNE1Q8NF91 SAR1AP2-201ENST00000392696 594 ntBASIC0.84□□□□□ -2.28
SYNE1Q8NF91 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 EEF1B2P7-201ENST00000451177 676 ntBASIC0.84□□□□□ -2.28
SYNE1Q8NF91 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 IL33-203ENST00000456383 2501 ntTSL 5 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 5S_rRNA.12-201ENST00000617631 107 ntBASIC0.84□□□□□ -2.28
SYNE1Q8NF91 BANCR-201ENST00000624238 473 ntTSL 2 BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
SYNE1Q8NF91 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 MIR34A-201ENST00000385130 110 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AC063976.3-201ENST00000426849 329 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 NPM1P49-201ENST00000448027 714 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AC112492.1-201ENST00000449607 712 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 snoU13.15-201ENST00000459407 104 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 ISCA1P3-201ENST00000577104 373 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 NSRP1P1-201ENST00000444067 1693 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AC117529.2-201ENST00000512159 2068 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 RNU6-146P-201ENST00000384602 108 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AL590084.1-201ENST00000407885 387 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 GLS-203ENST00000409215 632 ntTSL 4 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 RN7SKP223-201ENST00000410582 62 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 RNA5SP508-201ENST00000411327 119 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AC108078.3-201ENST00000502633 489 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AC117522.3-201ENST00000507974 584 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 PANCR-202ENST00000513690 448 ntTSL 2 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 OR5G4P-201ENST00000525251 760 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AC231759.1-201ENST00000616455 597 ntBASIC0.83□□□□□ -2.28
SYNE1Q8NF91 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 RBM6-203ENST00000421682 684 ntTSL 2 BASIC0.83□□□□□ -2.28
SYNE1Q8NF91 MTCO1P52-201ENST00000433928 531 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms