Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 HIGD1AP3-201ENST00000515857 278 ntBASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 AP000787.2-201ENST00000604432 568 ntBASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 AL513477.2-201ENST00000607858 568 ntBASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC112Q8NEF3 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 SAR1AP2-201ENST00000392696 594 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 RPL7P8-201ENST00000411964 730 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 BTF3P9-201ENST00000418784 283 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 HMGN2P20-201ENST00000437531 273 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 SSXP4-201ENST00000451349 245 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 RPS15AP1-201ENST00000457423 391 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 AC096992.1-201ENST00000459808 709 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 RPS3AP43-201ENST00000479743 781 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 RN7SL504P-201ENST00000494496 287 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 SNORA9.3-201ENST00000516383 129 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 FAM60DP-201ENST00000524174 632 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 AC004486.1-201ENST00000546846 233 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 AC106782.4-201ENST00000568264 210 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 AC009039.2-201ENST00000624524 529 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 OR5BR1P-201ENST00000524992 1330 ntBASIC3.19□□□□□ -1.9
CCDC112Q8NEF3 AL365361.1-201ENST00000566942 3481 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 MIR512-1-201ENST00000384913 84 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AL355379.1-201ENST00000405542 640 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 RPL26P37-201ENST00000411983 438 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AL671855.1-201ENST00000446875 1203 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 RPL7P52-201ENST00000449200 742 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AL162389.1-201ENST00000449233 177 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 HMGB1P26-201ENST00000452520 628 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AP000705.1-201ENST00000454567 350 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 RPL21P8-201ENST00000465083 535 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AC103975.1-201ENST00000482506 483 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 BLNK-209ENST00000495266 440 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AP000926.3-201ENST00000497201 299 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AC098799.2-201ENST00000509466 868 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 MTCYBP41-201ENST00000528913 1123 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 MIR4474-201ENST00000579189 78 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AC138473.1-201ENST00000605717 526 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AL590410.1-201ENST00000617925 333 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 AC018692.3-201ENST00000623929 123 ntBASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC112Q8NEF3 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 MIR22-201ENST00000362190 85 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 RNA5SP374-201ENST00000362939 125 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 RNU6-185P-201ENST00000384421 107 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 UBA52P6-201ENST00000399822 382 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 RPL7P44-201ENST00000424827 742 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 MTCYBP12-201ENST00000440559 1134 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 SNORA59A-201ENST00000459326 152 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 RPS3AP14-201ENST00000483907 780 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 HMGB1P38-201ENST00000490557 577 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 MTND2P26-201ENST00000528255 1029 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 MIR3670-2-201ENST00000582974 65 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms