Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 SNORA14A-201ENST00000364773 135 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 TPT1P2-201ENST00000413105 503 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC012065.2-201ENST00000421295 375 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 TMEM167AP1-201ENST00000423409 219 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AL590664.1-201ENST00000448065 339 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AL589880.1-201ENST00000448271 287 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 RPS11P1-201ENST00000451072 473 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 RPL7P5-201ENST00000471472 736 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 RPL32P34-201ENST00000486380 400 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 FTH1P21-201ENST00000512179 511 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AP001317.1-201ENST00000531194 960 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC005951.1-201ENST00000576706 485 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC090666.1-201ENST00000578241 445 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 MIR4666A-201ENST00000580160 79 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC107982.3-201ENST00000584957 985 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 BNIP3P22-201ENST00000593399 556 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC012669.1-201ENST00000603209 283 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 RPL23AP92-201ENST00000603609 255 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AP003973.1-201ENST00000604639 691 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 MIR92B-201ENST00000607575 96 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AL138880.2-201ENST00000616214 239 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AL021368.2-201ENST00000606125 5352 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 AC092435.3-201ENST00000565538 3654 ntBASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
ZNF540Q8NDQ6 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 SNORA40.4-201ENST00000390971 128 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AL136116.1-201ENST00000403591 381 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AL133264.1-201ENST00000407157 562 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AL137014.1-201ENST00000420490 1226 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 RPL27AP8-201ENST00000424277 446 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 MTCO1P39-201ENST00000426148 480 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AL691449.1-201ENST00000426570 421 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AL390879.2-203ENST00000426943 1121 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AC006989.1-201ENST00000427212 131 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 RRM2P4-201ENST00000441721 562 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 RPL21P11-201ENST00000461458 483 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AC104472.2-201ENST00000469035 601 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AC068724.1-201ENST00000487100 792 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms