Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC051619.2-201ENST00000559063 397 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC025281.1-201ENST00000567026 265 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 MTCO1P40-201ENST00000574371 625 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC022884.3-201ENST00000579571 248 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 MIR4271-201ENST00000582451 67 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 SUMO2P15-201ENST00000604285 278 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC096586.2-201ENST00000610260 441 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AL161616.1-201ENST00000611867 286 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AL512356.3-201ENST00000623005 461 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC020923.1-201ENST00000624021 917 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 CR392039.4-201ENST00000624968 501 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 CRYM-AS1-204ENST00000637983 556 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC090740.1-201ENST00000623193 2262 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AC009902.3-201ENST00000606235 2172 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 RNU1-85P-201ENST00000364127 164 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 SNORD114-30-201ENST00000364448 72 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 SNORA41-201ENST00000384675 132 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 DNAJC19P6-201ENST00000401853 280 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AL109941.1-201ENST00000401925 229 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 FAT1P1-201ENST00000406588 507 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AC112220.1-201ENST00000434628 355 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 UBE2FP3-201ENST00000436366 524 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 NIPA2P5-201ENST00000452282 464 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 NPM1P13-201ENST00000452663 865 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 RNU6-717P-201ENST00000459076 104 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AC078857.1-201ENST00000469870 667 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AC074386.1-201ENST00000476560 767 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 MTND3P6-201ENST00000485242 339 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 FAM172BP-201ENST00000487497 1089 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 RPL23AP49-201ENST00000492925 468 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 RNU1-40P-201ENST00000516816 164 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 RNU1-97P-201ENST00000516872 164 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 HMGB1P46-201ENST00000520062 610 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 CKS1BP7-201ENST00000522230 235 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AC126177.3-201ENST00000551839 688 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AL590392.1-201ENST00000604960 446 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 MIR6813-201ENST00000621638 56 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 AL365361.1-201ENST00000566942 3481 ntBASIC1.54□□□□□ -2.16
LINC00643Q86TS7 IL33-203ENST00000456383 2501 ntTSL 5 BASIC1.54□□□□□ -2.16
LINC00643Q86TS7 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AC096644.4-201ENST00000563417 2912 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AC010680.1-201ENST00000590024 3590 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
LINC00643Q86TS7 IGKV7-3-201ENST00000357453 298 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 RNA5-8SP7-201ENST00000363443 155 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
LINC00643Q86TS7 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
LINC00643Q86TS7 RNU6-851P-201ENST00000384565 107 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
LINC00643Q86TS7 TAF9BP1-201ENST00000396646 746 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 RN7SKP159-201ENST00000410657 292 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AL356379.1-201ENST00000414105 126 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 C4BPAP1-201ENST00000415474 1893 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AL512504.1-201ENST00000415494 778 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AC091390.3-201ENST00000426478 338 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AL445584.1-201ENST00000431451 330 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AC023347.2-201ENST00000433994 462 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC1.53□□□□□ -2.16
LINC00643Q86TS7 ATP6V0E1P2-201ENST00000441771 245 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.53□□□□□ -2.16
LINC00643Q86TS7 GPM6BP3-201ENST00000442797 145 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 RPS24P6-201ENST00000452670 400 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AL135752.1-201ENST00000479477 471 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 RPS4XP14-201ENST00000493072 781 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 RN7SL612P-201ENST00000497704 295 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC1.53□□□□□ -2.16
LINC00643Q86TS7 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AC097714.1-201ENST00000511272 1647 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC1.53□□□□□ -2.16
LINC00643Q86TS7 RN7SKP277-201ENST00000516895 283 ntBASIC1.53□□□□□ -2.16
LINC00643Q86TS7 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms