Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS53Q5VIR6 NANOGP6-201ENST00000429190 847 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS53Q5VIR6 YWHAZP8-201ENST00000436935 731 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS53Q5VIR6 KATNBL1P6-201ENST00000453433 915 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 RPS15AP1-201ENST00000457423 391 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 AC116337.2-201ENST00000477662 156 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 MTCO1P30-201ENST00000515244 580 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 MTND1P5-201ENST00000517906 940 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS53Q5VIR6 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS53Q5VIR6 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS53Q5VIR6 AP001207.1-201ENST00000524051 481 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS53Q5VIR6 EIF5A2P1-201ENST00000564027 460 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 U73023.1-201ENST00000603134 700 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 AC020910.2-201ENST00000603635 610 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 AL136363.2-201ENST00000604173 851 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 AC104662.1-201ENST00000604448 511 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 AC128687.1-201ENST00000605304 619 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 AL021997.1-201ENST00000605757 193 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 AL031775.1-201ENST00000607014 887 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 AC105429.2-201ENST00000610567 517 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 AC233309.1-201ENST00000619522 751 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 AL356121.2-201ENST00000624715 780 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 OR5BE1P-202ENST00000641168 1176 ntBASIC4.88□□□□□ -1.63
VPS53Q5VIR6 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS53Q5VIR6 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
VPS53Q5VIR6 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS53Q5VIR6 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS53Q5VIR6 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS53Q5VIR6 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 RNU6-492P-201ENST00000363035 104 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 RNA5SP515-201ENST00000364570 118 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 RNA5SP513-201ENST00000364648 118 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 RNU6-1279P-201ENST00000383917 103 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 ATP5F1P4-201ENST00000397288 746 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 CYCSP45-201ENST00000402289 315 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 RNU2-16P-201ENST00000410712 136 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 C8orf59P1-201ENST00000429930 303 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC010881.1-201ENST00000433830 235 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 RPS11P1-201ENST00000451072 473 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 RPS26P15-201ENST00000488067 348 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC011352.3-201ENST00000505162 593 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC004069.2-201ENST00000505438 1114 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC079140.3-201ENST00000511111 550 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 RNU6-720P-201ENST00000516363 108 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 RN7SKP234-201ENST00000517173 224 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 RNU6-1261P-201ENST00000517194 104 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 ZDHHC20P3-201ENST00000531576 336 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC010546.1-201ENST00000569391 485 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC138915.2-201ENST00000569776 97 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 MIR4504-201ENST00000577413 92 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AP001180.3-201ENST00000582221 145 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AP003465.2-201ENST00000602571 373 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 MTCYBP22-201ENST00000603788 447 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC010680.3-201ENST00000604215 520 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC106028.5-201ENST00000610332 395 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC100793.4-201ENST00000613683 429 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 AC009509.4-201ENST00000619202 509 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 MIR4496-201ENST00000635896 61 ntBASIC4.87□□□□□ -1.63
VPS53Q5VIR6 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS53Q5VIR6 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 ENSAP1-201ENST00000392855 326 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 BTBD10P2-201ENST00000404779 676 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 MIR1284-201ENST00000408337 120 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 BOLA3P4-201ENST00000418151 400 ntBASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms