Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC109315.1-201ENST00000584143 1347 ntBASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 RNU6-673P-201ENST00000365084 104 ntBASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 SNORD6-201ENST00000365444 73 ntBASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 AC012498.1-201ENST00000424037 437 ntBASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 ISCA1P6-201ENST00000427740 390 ntBASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 AL590103.1-201ENST00000434488 307 ntBASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 RPL21P99-201ENST00000480369 423 ntBASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 AC011037.1-201ENST00000483964 558 ntBASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 AC055876.1-202ENST00000567053 138 ntBASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 AC015849.6-201ENST00000605454 474 ntBASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 AL135786.2-201ENST00000608422 615 ntBASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 CR381653.2-201ENST00000624041 768 ntBASIC3.21□□□□□ -1.9
CCDC88AQ3V6T2 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 SNORA62.2-201ENST00000364672 152 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 VN1R31P-201ENST00000417498 730 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 AC092013.1-201ENST00000438795 332 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 OR6K1P-201ENST00000456766 971 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 BNIP3P8-201ENST00000597863 560 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 BX005019.1-201ENST00000561881 1810 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 AL136964.1-201ENST00000622038 2990 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 SNORA3.2-201ENST00000408221 125 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 RPLP0P7-201ENST00000416050 667 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 RPL7P10-201ENST00000417407 739 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 AC112220.1-201ENST00000434628 355 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 AP002371.1-201ENST00000463604 433 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 RNA5SP458-201ENST00000516188 119 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 AL355836.1-201ENST00000555951 870 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 AC025811.1-201ENST00000604312 472 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 AC007938.3-201ENST00000604965 623 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 AC023813.4-201ENST00000607580 580 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 AL159169.2-201ENST00000610061 1269 ntBASIC3.2□□□□□ -1.9
CCDC88AQ3V6T2 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 SNORA70E-201ENST00000384492 135 ntBASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 AC093151.1-201ENST00000427711 313 ntBASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 AL353597.2-202ENST00000434901 373 ntBASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 TRBV8-1-201ENST00000481590 279 ntBASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 SNORA70.14-201ENST00000516205 110 ntBASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 AL161912.3-201ENST00000605404 628 ntBASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 AC099063.3-201ENST00000642066 185 ntBASIC3.19□□□□□ -1.9
CCDC88AQ3V6T2 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 AL512633.1-201ENST00000399931 655 ntBASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 ATF1P1-201ENST00000406040 927 ntBASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 HMGB1P15-201ENST00000453854 435 ntBASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 MTND2P17-201ENST00000550281 688 ntBASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 AC068446.3-201ENST00000555285 382 ntBASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 AC000123.2-201ENST00000623124 461 ntBASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 MIR6733-201ENST00000635723 61 ntBASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 LRRC77P-213ENST00000637727 880 ntBASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 SYT14P1-202ENST00000600441 1448 ntBASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 AC104454.1-201ENST00000421341 1401 ntBASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC88AQ3V6T2 AL355379.1-201ENST00000405542 640 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms