Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
LHX1P48742 MFSD8-236ENST00000641509 4050 ntBASIC3.83□□□□□ -1.8
LHX1P48742 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LHX1P48742 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LHX1P48742 SNORA71.3-201ENST00000362582 128 ntBASIC3.83□□□□□ -1.8
LHX1P48742 Y_RNA.192-201ENST00000363977 102 ntBASIC3.83□□□□□ -1.8
LHX1P48742 Y_RNA.408-201ENST00000383987 102 ntBASIC3.83□□□□□ -1.8
LHX1P48742 MIR506-201ENST00000384998 124 ntBASIC3.83□□□□□ -1.8
LHX1P48742 AL355379.1-201ENST00000405542 640 ntBASIC3.83□□□□□ -1.8
LHX1P48742 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.83□□□□□ -1.8
LHX1P48742 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LHX1P48742 AC005517.2-201ENST00000424673 553 ntBASIC3.83□□□□□ -1.8
LHX1P48742 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.83□□□□□ -1.8
LHX1P48742 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.83□□□□□ -1.8
LHX1P48742 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.83□□□□□ -1.8
LHX1P48742 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.83□□□□□ -1.8
LHX1P48742 AC092641.1-201ENST00000440229 772 ntBASIC3.83□□□□□ -1.8
LHX1P48742 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.83□□□□□ -1.8
LHX1P48742 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.83□□□□□ -1.8
LHX1P48742 RPL21P23-201ENST00000446654 460 ntBASIC3.83□□□□□ -1.8
LHX1P48742 Z73417.1-201ENST00000447373 778 ntBASIC3.83□□□□□ -1.8
LHX1P48742 SNORD108-201ENST00000459332 71 ntBASIC3.83□□□□□ -1.8
LHX1P48742 SETP14-201ENST00000497538 873 ntBASIC3.83□□□□□ -1.8
LHX1P48742 TMEM248P1-201ENST00000510579 951 ntBASIC3.83□□□□□ -1.8
LHX1P48742 RN7SKP13-201ENST00000515933 244 ntBASIC3.83□□□□□ -1.8
LHX1P48742 DUXAP2-201ENST00000519198 589 ntBASIC3.83□□□□□ -1.8
LHX1P48742 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.83□□□□□ -1.8
LHX1P48742 OR5B10P-201ENST00000532869 642 ntBASIC3.83□□□□□ -1.8
LHX1P48742 RFPL1S-203ENST00000539579 330 ntBASIC3.83□□□□□ -1.8
LHX1P48742 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.83□□□□□ -1.8
LHX1P48742 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.83□□□□□ -1.8
LHX1P48742 AC107016.1-201ENST00000550463 337 ntBASIC3.83□□□□□ -1.8
LHX1P48742 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.83□□□□□ -1.8
LHX1P48742 AL133457.1-201ENST00000564251 987 ntBASIC3.83□□□□□ -1.8
LHX1P48742 AC053481.3-201ENST00000577881 843 ntBASIC3.83□□□□□ -1.8
LHX1P48742 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.83□□□□□ -1.8
LHX1P48742 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.83□□□□□ -1.8
LHX1P48742 KLKP1-201ENST00000595979 403 ntBASIC3.83□□□□□ -1.8
LHX1P48742 AC234772.3-201ENST00000602277 528 ntBASIC3.83□□□□□ -1.8
LHX1P48742 AC113368.1-201ENST00000603736 382 ntBASIC3.83□□□□□ -1.8
LHX1P48742 AC006077.1-201ENST00000604746 343 ntBASIC3.83□□□□□ -1.8
LHX1P48742 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.83□□□□□ -1.8
LHX1P48742 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.83□□□□□ -1.8
LHX1P48742 AC244258.1-201ENST00000637553 1071 ntBASIC3.83□□□□□ -1.8
LHX1P48742 DCAF13P1-201ENST00000495256 1330 ntBASIC3.83□□□□□ -1.8
LHX1P48742 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
LHX1P48742 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.83□□□□□ -1.8
LHX1P48742 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LHX1P48742 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LHX1P48742 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.83□□□□□ -1.8
LHX1P48742 AC095050.2-201ENST00000510748 1458 ntBASIC3.83□□□□□ -1.8
LHX1P48742 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.83□□□□□ -1.8
LHX1P48742 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LHX1P48742 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LHX1P48742 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LHX1P48742 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.82□□□□□ -1.8
LHX1P48742 AL365440.1-201ENST00000436135 2167 ntBASIC3.82□□□□□ -1.8
LHX1P48742 AL359893.1-201ENST00000447628 1580 ntBASIC3.82□□□□□ -1.8
LHX1P48742 ZNF734P-201ENST00000419494 1534 ntBASIC3.82□□□□□ -1.8
LHX1P48742 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.82□□□□□ -1.8
LHX1P48742 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LHX1P48742 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LHX1P48742 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
LHX1P48742 RNU6-374P-201ENST00000364146 108 ntBASIC3.82□□□□□ -1.8
LHX1P48742 MIR7-3-201ENST00000384898 110 ntBASIC3.82□□□□□ -1.8
LHX1P48742 ATP5F1P4-201ENST00000397288 746 ntBASIC3.82□□□□□ -1.8
LHX1P48742 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.82□□□□□ -1.8
LHX1P48742 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.82□□□□□ -1.8
LHX1P48742 HMGB1P49-201ENST00000418882 569 ntBASIC3.82□□□□□ -1.8
LHX1P48742 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX1P48742 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX1P48742 RPL21P109-201ENST00000422213 475 ntBASIC3.82□□□□□ -1.8
LHX1P48742 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX1P48742 USP9YP11-201ENST00000427537 717 ntBASIC3.82□□□□□ -1.8
LHX1P48742 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX1P48742 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX1P48742 AC092757.1-201ENST00000467293 467 ntBASIC3.82□□□□□ -1.8
LHX1P48742 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.82□□□□□ -1.8
LHX1P48742 AC012170.1-201ENST00000495139 359 ntBASIC3.82□□□□□ -1.8
LHX1P48742 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.82□□□□□ -1.8
LHX1P48742 AC116353.3-201ENST00000511215 249 ntBASIC3.82□□□□□ -1.8
LHX1P48742 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX1P48742 RN7SKP83-201ENST00000516512 178 ntBASIC3.82□□□□□ -1.8
LHX1P48742 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC3.82□□□□□ -1.8
LHX1P48742 AC103843.2-201ENST00000530523 682 ntBASIC3.82□□□□□ -1.8
LHX1P48742 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.82□□□□□ -1.8
LHX1P48742 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.82□□□□□ -1.8
LHX1P48742 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX1P48742 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.82□□□□□ -1.8
LHX1P48742 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LHX1P48742 AC125611.1-201ENST00000549563 229 ntBASIC3.82□□□□□ -1.8
LHX1P48742 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX1P48742 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
LHX1P48742 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.82□□□□□ -1.8
LHX1P48742 DUXAP3-201ENST00000603616 594 ntBASIC3.82□□□□□ -1.8
LHX1P48742 RNA5SP108-201ENST00000605921 117 ntBASIC3.82□□□□□ -1.8
LHX1P48742 OR6R2P-201ENST00000609216 300 ntBASIC3.82□□□□□ -1.8
LHX1P48742 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX1P48742 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.82□□□□□ -1.8
LHX1P48742 AC063944.3-201ENST00000609969 533 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms